Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1129 |
Symbol | |
ID | 3366623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 1280128 |
End bp | 1281294 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637651470 |
Product | secretion protein HlyD |
Protein accession | YP_234221 |
Protein GI | 66044380 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0780076 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCAGAA AGACCCTGAC CGTCACCGCC GTCGTCCTGG TGATCGCCTG TGCGGCGATT GCCGGCTGGA AACTGACACG CCCGGCCGCA CTCCCCAAAA ATGCCGCTGC CGCTGTGCCC GTCAAAGTGA TCACGGTCAG CCTTGAAGAC GTACCGCGTT TCGTCACAGG GATCGGATCG GTGCTGTCGC TGCAAAGCGT GGTGATCCGC CCCCAGGTGG ATGGGGTGCT GACGCGTGTG TTGGTCAAGG AAGGTCAGCA GGTCAAGGCC GGGGACCTGC TGGCAACGCT GGATGACCGC TCTATCCGGG CCGCGCTGGA GCAGGCGCGT GCCCAGTTGG CGCAGAGCAA GGCGCAGCTG GACGTCGCGC AACTGGACCT CAAGCGCTAT CGCCAGCTCA CCCAGGACAA TGGCATCTCG CGGCAGACAT TCGACCAACA GCAGGCAATG GTCAGGCAAC TCGAAGCCAC GGCGAAAGGC AACGAAGCGA GCATCAACGC CTCACAGGTG CAGTTGTCCT ACACCCAGAT TCGCTCGCCG GTGACGGGAC GGGTCGGTAT TCGCAACGTC GATGAAGGCA ACTTCCTGCG CGTCAGCGAT GCTGCAGGGC TGTTTTCAGT GACCCAGATC GACCCGATTG CCGTGGAGTT TTCCCTGCCA CAGCAAATGT TGCCGACCCT GCAGGGGCTG ATTGCCGAAC GTAACGCTGC GACCGTCAAG GCGTATCAGG GCGACGGCGC GGCCAACGGC CTGCTGCTGG GTGAAGGCAC GCTTTCATTG ATCGACAATC AGGTGTCGGC AAGCACCGGT ACGATCCGCG CCAAGGCGCA ATTCAAAAAC CCCGGCGAGC AACTCTGGCC GGGGCAACTG GTGACCGTGA AGATCCAGAC CGGTATCGAA CTCAACTCGC TGAAAGTGCC GCCACAAGTG GTGCAGCGCG GCGTTGACCT GCACTTCGTC TATCGGCTCA CTGCCGATAA CAAGGTAGAA GTCGTACCCG TCAAAGTGCT CTATCAGGAC AGCGAACAGA CATTGATCAG CGGGCCGCGT GCTGGCGATG TACTGGTCAG CGACGGCCAG TCGCGGCTAC GCCCCGGCGC AACGGTCGAA GTGATCACCG CGCCTGCTGC GGATGTCGCG AGCGCGCAAG TGGAGCCCGC ACGATGA
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Protein sequence | MRRKTLTVTA VVLVIACAAI AGWKLTRPAA LPKNAAAAVP VKVITVSLED VPRFVTGIGS VLSLQSVVIR PQVDGVLTRV LVKEGQQVKA GDLLATLDDR SIRAALEQAR AQLAQSKAQL DVAQLDLKRY RQLTQDNGIS RQTFDQQQAM VRQLEATAKG NEASINASQV QLSYTQIRSP VTGRVGIRNV DEGNFLRVSD AAGLFSVTQI DPIAVEFSLP QQMLPTLQGL IAERNAATVK AYQGDGAANG LLLGEGTLSL IDNQVSASTG TIRAKAQFKN PGEQLWPGQL VTVKIQTGIE LNSLKVPPQV VQRGVDLHFV YRLTADNKVE VVPVKVLYQD SEQTLISGPR AGDVLVSDGQ SRLRPGATVE VITAPAADVA SAQVEPAR
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