| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1100 |
|---|
| Symbol | |
|---|
| ID | 3366594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1244685 |
|---|
| End bp | 1246415 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637651441 |
|---|
| Product | PAS |
|---|
| Protein accession | YP_234192 |
|---|
| Protein GI | 66044351 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.897667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACCT CGCCAGTGGA CCGCCCGCTT GTCGACGCTC AGTCTCGCGC TGAAAAAATC
GTCGAATCTC GCCGTCAGAA AATCCTTCTC AAGACCGGCG CGCTGCAGGA CGCAATTTTC
AACAGCGCCT ACTTCTCCAG CATCGCAACC GATGAGCACG GCGTTATCCA GATATTCAAT
GTCGGCGCCG AACGGATGCT CGGCTATCAC TCCGAAGACG TGGTCGACAA GATCACACCT
GCGGACATCT CCGACCCCGC CGAGCTCATC ATCCGCGCGG CGGCCCTCAG CCATGAACTC
AACACGCCCA TCACGCCGGG TTTCGAAGCC CTGGTATTCA AGGCTTCGCG CGGCATCGAA
GACATCTACG AACTGACCTA CATCCGCAAG GATGGCAGCC GCCTGTCGGC CATGGTCTCG
GTCACGTCAC TGCGCGACAG CGCCGAAACC ATCATCGGTT ATCTGCTGAT CGGCACCGAC
AACACCGCGC GCAAGCAGGA GGAAGAAGCT CAGGCCTTGC TCGATCAGCG CTTGCGGGAC
CAACAGTTCT ATACCCGCTC ACTGATCGAG TCGAACATCG ATGCGCTGAT GATGACCGAC
CCGCAAGGCA TCATTTCCGA CGTCAACAAG CAGATGATGG CGCTGACCGG GCGCACCCGC
GACGAATTGA TCGGCGCGCC CTGCAAGAAC TTCTTCACCG ACCCGGCGAG TGCCGATGCC
GCCATCAAGC GCGTGCTCAG CGAGCACAAG GTCAGTGACT ACGAACTCAC CGTGCGCGCC
TACGACGGCA CTGAAACCGT GGTGTCCTAC AACGCCGCGA CCTTTCATGA CCGTGACCGC
AAGCTCAAGG GTGTCTTCGC CGCGGCCCGC GACGTGACCG AGCGCAAGCG TTTCGAGCGA
ACGCTGGAAG AAAAGAATAT CGAGCTGGAA CACGCCAGCC ACATGAAGTC CGAGTTTCTT
GCCACCATGT CGCACGAGCT GCGCACCCCG CTCAACGCCG TGATCGGTTT CTCCGAGGCA
CTCAGGGACG GCATGGTCGG CGACATGACC GATGCCCAGC GACGCTACAT AGGCGATATC
TTCAACAGCG GCCAGCACCT GCTGTCGCTG ATCAATGACA TCCTCGACCT GTCCAAGGTC
GAGGCCGGCA TGATGACGCT GGAGCTCGAG TCGGTCGATC TGGACGAACT GCTGAGCAAC
AGCCTGCTGA TCGTGCGTGA GCAAGCCGCC CTGCAACACA TTCAGCTGAA ACTGGAAACA
GAGGCCGAAT TCGGTGAGCT TGAGCTCGAT CGACGCAAGA CCAAGCAGAT CGTCTACAAC
CTGCTGGCCA ACGCCGTGAA ATTCAGCGAG CCCGGTGGCT GGGTGACGCT GGCGGTGCGA
TTGGTGCCGG CTTCCCAGGC GGGTCTTATC GATGGCGACT GGCCGACCTA CGGGTTTGCG
CTTGCGTCCG GTGACTGTGA GCAGTTTCTG GAACTGAGTG TCAGCGACAC CGGAATCGGC
ATCGCCCAAA GCGACATGAA CAAGCTGTTC AAGGCGTTCA GCCAGATCGA CAGCGGCCTG
GCACGCAAAT TCGAGGGCAC CGGACTGGGT CTTGCGATGG TCAAGCAACT GACCGAACTT
CACGGCGGCT GCGTCGCGGT CGCCAGCGTG AAGGACCTCG GCGCACGCTT CGTGGTCTGG
CTGCCCATCC GCTCACCTGA ATCAGCGGAG GCGCGATGGC CCAGATCCTG A
|
|---|
| Protein sequence | MPTSPVDRPL VDAQSRAEKI VESRRQKILL KTGALQDAIF NSAYFSSIAT DEHGVIQIFN
VGAERMLGYH SEDVVDKITP ADISDPAELI IRAAALSHEL NTPITPGFEA LVFKASRGIE
DIYELTYIRK DGSRLSAMVS VTSLRDSAET IIGYLLIGTD NTARKQEEEA QALLDQRLRD
QQFYTRSLIE SNIDALMMTD PQGIISDVNK QMMALTGRTR DELIGAPCKN FFTDPASADA
AIKRVLSEHK VSDYELTVRA YDGTETVVSY NAATFHDRDR KLKGVFAAAR DVTERKRFER
TLEEKNIELE HASHMKSEFL ATMSHELRTP LNAVIGFSEA LRDGMVGDMT DAQRRYIGDI
FNSGQHLLSL INDILDLSKV EAGMMTLELE SVDLDELLSN SLLIVREQAA LQHIQLKLET
EAEFGELELD RRKTKQIVYN LLANAVKFSE PGGWVTLAVR LVPASQAGLI DGDWPTYGFA
LASGDCEQFL ELSVSDTGIG IAQSDMNKLF KAFSQIDSGL ARKFEGTGLG LAMVKQLTEL
HGGCVAVASV KDLGARFVVW LPIRSPESAE ARWPRS
|
|---|
| |