Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1098 |
Symbol | |
ID | 3366592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 1242184 |
End bp | 1244301 |
Gene Length | 2118 bp |
Protein Length | 705 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637651439 |
Product | PAS:GGDEF |
Protein accession | YP_234190 |
Protein GI | 66044349 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGAGA GCGCCGCGAC CATCCTGATT ATCGATGACG ACGTCCATGT CCGGGACCTG CTGGAGGTTC TCTTGCAGAA CCAGGGTTAC CGGACATTGA CGGCGGAATC AGGCGAGCTG GCGCTGGCCA TGGTCAAACG ACAGGCACCC GACCTGATCC TGCTGGACAT CATGATGCCG GGCATGGACG GCTATGAAGT CGCCAGCCAG CTCAAGGCCG AAAAGGGCAC CGCCAATATA CCGATCATCA TGCTCTCGGC ACTCGACGAC CAGAGTTCCC GTCTTTCAGG GCTGGAAGCG GGGGCCGAGG AATACCTCAA CAAGCCTGTG GACAGCGCCG AACTGTGGCT GCGCGTGCGT AACCTGCTGC GTCTCAAGGC GTTCGGCGAC TACCTGAAGA GCCACAGCCT GATCCTCGAA GATCAGTTGC AGCAGCGCAC CATCGATCTC GAGCGTTTTC GCACGGTAAT GGACGCCTCC GAAGACGCGA TCTTCCTGAT CAACCGCAAC ACCATGAGCC TGATCGAATT CAACCGCCGG GCCTGCCAGT TGCTGGGCTA CACCGCCGAG GAGCTGTCGC ACAAGACACC TGCGGAACTG GGCGAGACGT CCATGGAGCA GCTTGAGGTC GTGTATGACC AGATCATCGC CGGCAAAGGC CCCAGCGAAC CGCTGGAAAC CCAGATTCGC GACAAGAGCG GCCGGGATGT CGAGGTCGAA ATCCATCGCC AGGCCTACCG GACCGGCGAG GACTGGGTCA TCGTCGGCAT CGTGCGCGAC ATCACCCGGC GCAAGGAAAG CGACCAGCGC CTGCTGACCA TGGCCCACTA CGACACGCTG ACCGGCCTGC CCAACCGGGA TCTGTTTTTT ACCAGCCTGC AAATGGGCAT GACCCAGGCG GCCATCAGTC GCTGGAAGCT GGCGGCATTG ACGGTCAATA TCGACGGTTT CAAGAACATC AACGAAACCT GGGGGCATGT GCTGGGCGAT GAGGTGCTGC TGGAAGTCAG CCGCCGACTG TCGAACTGCC TGAATGCCAG CGACACCCTC GGCCGCGTGG ACGGCGATCA GTTCGCCCTG ATTCTGATGC TTCGTCCCGG CCAGGCGGAT ACCCGGCAAA CGCTCGAACG CATCCGCAAC GCATTGCGAG CGCCCTTCCG CATAGAAGGC CAGAGCCTGG TCATGACCGC CAGCATCGGC ATTGCCCTGT ACCCGGAGGA TGGCGAAGAC TCGCGCGAGC TGATCAGACA TGCCTACACC GCCATGAACA GCGCTCGAAA GATCGGCCCG GACAACTACC GGTTCTATAC GCCGCAGATG AACGCCGACG TTTCGGCCCG TCTGGACCTT GAGGCCGCGC TGCGCGAAGC GGTGCGCAAC CAGGCCTTCG AAATCGTCTA CCAACCCAAG CTGGACCTGA ACAACGACCG TATCTGCGGA CTTGAGGCGC TGTTGCGCTG GCCACGCCCT GGTCATCCAG GCGTTTCGCC TGCCGTATTT GTCCCCGTAC TGGAAAGCCT CGGCCTGATC GGTGAAGTCG GCAACTGGGT GGTCGACAGC GTCTGCGCCC AGATTGCGCG CTGGCAACGC TCCGGATTGG GCTCGTTTCA GGTCGCGGTC AACATCTCCG GGCAACAGAT TTCCAGCAGC AGCCTGGTTG CCGACATCCG TCAGGCCCTC GAAAAACACA ATGTTGCGCC GCAGTGGCTT GAGGTCGAGC TGACAGAAAG TTCGTTGATG GAAAATACCG CACACACCAT CGCCACCCTG GGAGCACTGC GAGCCAACCG CGTGAGTATT TCCATCGACG ACTTCGGCAC CGGCTATTCA AGCCTGGCGT ACCTGCGCCG CTTCCCTATC GACAAGCTGA AAATCGACAT CGCATTCATT CGCGAGGTGA CCAGCAACCC ACAGGACGCG GCCATCGCCA GAGCCATCAT CGAGCTGGCT CACAGCCTCG ACCTGCAGGT GATCGCCGAA GGGGTTGAAA CCCCAGAGCA ACTGGCGTTC CTGCGCGAAA ACCATTGCGA TCAAATTCAG GGCTATCTGA TCAGCAAGCC ACTGCCGCTT GAAGAGCTCG AAACGTTTTT GTGCTCACCG GCAAGCCGCG TCGGGTAA
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Protein sequence | MTESAATILI IDDDVHVRDL LEVLLQNQGY RTLTAESGEL ALAMVKRQAP DLILLDIMMP GMDGYEVASQ LKAEKGTANI PIIMLSALDD QSSRLSGLEA GAEEYLNKPV DSAELWLRVR NLLRLKAFGD YLKSHSLILE DQLQQRTIDL ERFRTVMDAS EDAIFLINRN TMSLIEFNRR ACQLLGYTAE ELSHKTPAEL GETSMEQLEV VYDQIIAGKG PSEPLETQIR DKSGRDVEVE IHRQAYRTGE DWVIVGIVRD ITRRKESDQR LLTMAHYDTL TGLPNRDLFF TSLQMGMTQA AISRWKLAAL TVNIDGFKNI NETWGHVLGD EVLLEVSRRL SNCLNASDTL GRVDGDQFAL ILMLRPGQAD TRQTLERIRN ALRAPFRIEG QSLVMTASIG IALYPEDGED SRELIRHAYT AMNSARKIGP DNYRFYTPQM NADVSARLDL EAALREAVRN QAFEIVYQPK LDLNNDRICG LEALLRWPRP GHPGVSPAVF VPVLESLGLI GEVGNWVVDS VCAQIARWQR SGLGSFQVAV NISGQQISSS SLVADIRQAL EKHNVAPQWL EVELTESSLM ENTAHTIATL GALRANRVSI SIDDFGTGYS SLAYLRRFPI DKLKIDIAFI REVTSNPQDA AIARAIIELA HSLDLQVIAE GVETPEQLAF LRENHCDQIQ GYLISKPLPL EELETFLCSP ASRVG
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