Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1045 |
Symbol | |
ID | 3366539 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 1180342 |
End bp | 1181826 |
Gene Length | 1485 bp |
Protein Length | 494 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637651388 |
Product | RND efflux system, outer membrane lipoprotein, NodT |
Protein accession | YP_234139 |
Protein GI | 66044298 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.44263 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCGCGTC GCATCATCAG AGGGCTCTGG CCCGTCGGTA TTCTGGCTTT TACGCTGGTC ATCAGCGGCT GTATCGGAAC ACATGGAATC AAATCGCAGG GCAGTCTCCT GCACGCTGAC AGCCTGGTCA CCGATCAGGC GATTCAGAGC GCTGCTCTCG ACGCCCATTG GCCCGCAGCG CAATGGTGGC GTGCCTACGG CGACGCGCAA CTGGACTGCT GGGTCGAGAT GGCGACGCTG GGCAGCCCGA GTCTGGCACT TGCTGCGGCT CGTGTGCGCC AGGCAAGGGC GATGGCGCAG GTCGCCGAGT CTGCCGAGTC CGTGCAGCTG CAGGGCAACG CCAGCCTGAT GCGTCACGAC TGGCCCGAGG ATCAGTTTTA TGGTCCCGGA GCGCTGGCCG ATACTCGCAC CTGGGACAAC AATGCGTCGC TGGGCTTGAG CTACGCGCTG GACCTGTGGG GACGTGAACG CAACGCCAGC GAGCAGGCCG TTGATCTGGC GCATGTGAGT GCTGCCGAGC AGCGTCAGGC GCAGCTCGAA TTGCAGGAAA ACGTGGTCCG CGCCTATATC CAGCTGTCCC TCGACTACGC CCGACTGGAT ATCGCCGAAG CGGCCCTGGC CCAGCAGCAA CAGATACTCG ACCTGGCGCA GCGCCGCCTC AAGGGCGGGA TCGGCACGCA CTTCGACGTC AGTCAGGCCG AAACCCCGCT GCCTGAGGCG CATCGGCAGA TCGACGCGCT GCAAGAGGCC ATTGCCCTGA GTCGCAACCA GTTGGCCGCG CTGGCAGGCA AGGGGCCGGG GCAGGGCGCG GCCTTGCAGC GGCCTGCGCT GTCGTTGCAT ACCGCACTGA CATTGCCCTC GGCACTGCCT GCCGAACTGC TGGGTCAGCG ACCTGACGTG GTGGCTGCGC GCTGGCAGGT GGCGGCGCAG GCACGCGGTA TCGACGTTGC ACATGGCGGC TTTTATCCCA ATGTCGATCT GGTCGGCAGC CTGAGTTACA TGGCCACGGG CGGCGGCGTG CTGGAGTTTC TGACCGGCAG CAAGCTGGGC TACAAGGTCG GGCCGGCCAT CAGCCTGCCG ATCTTCGACG CTGGACGCTT GCGGGCGGAG CTGGGGCGGG CGTCGGCTGC TTATGATCAG GCCGTGGCGC ATTACAACCA GACGCTGGTG ATGGCGCTGA AAAGTGTCTC CGACCAGTTG ATTCGGCGTG CCTCGATGGA CAAGCAGCAG GCACTCGCCG CCGAGTCGGT GGCGTCGGCG CAAAAGACCT ACGACATTGC CCTGATCGCC TGGCAGCGCG GCCTGACCGA TTACCTGAAC GTGCTCAATG CGCGCACGCA ACTGTTCCGC CAGCAACAGG TTCAGCAACA GGTCGAGGCT GCGCGACTGG AAGCCTACGC CGGGCTGGTG GTGGCGCTGG GCGGTGACGG GGATGGCAAT GGTCATTCCG CACACACCGC CGCCGAGTCC GGGGGCGGGC AATGA
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Protein sequence | MPRRIIRGLW PVGILAFTLV ISGCIGTHGI KSQGSLLHAD SLVTDQAIQS AALDAHWPAA QWWRAYGDAQ LDCWVEMATL GSPSLALAAA RVRQARAMAQ VAESAESVQL QGNASLMRHD WPEDQFYGPG ALADTRTWDN NASLGLSYAL DLWGRERNAS EQAVDLAHVS AAEQRQAQLE LQENVVRAYI QLSLDYARLD IAEAALAQQQ QILDLAQRRL KGGIGTHFDV SQAETPLPEA HRQIDALQEA IALSRNQLAA LAGKGPGQGA ALQRPALSLH TALTLPSALP AELLGQRPDV VAARWQVAAQ ARGIDVAHGG FYPNVDLVGS LSYMATGGGV LEFLTGSKLG YKVGPAISLP IFDAGRLRAE LGRASAAYDQ AVAHYNQTLV MALKSVSDQL IRRASMDKQQ ALAAESVASA QKTYDIALIA WQRGLTDYLN VLNARTQLFR QQQVQQQVEA ARLEAYAGLV VALGGDGDGN GHSAHTAAES GGGQ
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