Gene Psyr_0904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0904 
Symbol 
ID3366396 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1023841 
End bp1024605 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content62% 
IMG OID637651247 
ProductShort-chain dehydrogenase/reductase SDR 
Protein accessionYP_234000 
Protein GI66044159 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCGTT TCACCCAAAA AGTCATCGTC GTCACAGGTG CCGGTTCCGG AATCGGCGAA 
GCGACCGCCA AACGTTTTGC CGAGGAAGGC GCGAGCGTGG TGCTGGTCGG CCGCAATCAC
GACAAGCTGG CCAAGGTGGC CGCGCAACTG AAGGGCGAAG GGCACTTGGT CAGAGCCACG
GATGTGGCCG ACCCGAGCGA CGTGGAAGCG CTGTTCAAGG AAGTGGCGAC CCGTTTCGGG
CGTCTGGATG TGCTGGTCAA CAATGCCGGC ATCGTCAAGT CCGGCAAAGT GACCGAGCTG
GGCATAGAGG ACTGGAAAGA GCTGATGTCC GTGGACCTGG ACGGCGTGTT CTATTGCACC
CGCACCGCCA TGCCGGCACT GATCGCCAGC AAAGGCAACA TCATCAATGT CTCGTCGGTG
TCCGGTCTGG GCGGCGACTG GGGCATGAGC TTCTATAACG CGGCCAAGGG TGCCATCACC
AACTTCACCC GTTCGCTGGC CATGGATCAT GGTGCTGACG GCGTGCGTGT GAATGCCGTT
TGCCCCTCAC TGACCCGCAG CGAGCTGACC GAAGACATGC TCGGCGACAA AGCGTTGATG
GCCAAATTCA TGGAGCGCAT CCCATTGGGG CGCCCGGGTG AAGCCGAAGA CGTCGGCGAC
GTGATTGCCT TTCTGGCCAG CGATGACGCG CGCTTCGTGA CCGGCGTCAA CCTGCCGGTA
GACGGTGGCC TGTCGGCGTC CAACGGGCAG CCGCCGCAGG CCTGA
 
Protein sequence
MNRFTQKVIV VTGAGSGIGE ATAKRFAEEG ASVVLVGRNH DKLAKVAAQL KGEGHLVRAT 
DVADPSDVEA LFKEVATRFG RLDVLVNNAG IVKSGKVTEL GIEDWKELMS VDLDGVFYCT
RTAMPALIAS KGNIINVSSV SGLGGDWGMS FYNAAKGAIT NFTRSLAMDH GADGVRVNAV
CPSLTRSELT EDMLGDKALM AKFMERIPLG RPGEAEDVGD VIAFLASDDA RFVTGVNLPV
DGGLSASNGQ PPQA