| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0894 |
|---|
| Symbol | |
|---|
| ID | 3366386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1014523 |
|---|
| End bp | 1014927 |
|---|
| Gene Length | 405 bp |
|---|
| Protein Length | 134 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637651237 |
|---|
| Product | PilT protein, N-terminal |
|---|
| Protein accession | YP_233990 |
|---|
| Protein GI | 66044149 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1487] Predicted nucleic acid-binding protein, contains PIN domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.282292 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGT ACATGCTTGA CACCAACATT TGCATTTTTA CTATAAAGAA CAAGCCAGCT
TCGGTGCGTG AAGCCTGCAA CCTCCATCAC GGACAGCTAC GTATCAGCGC GATCACATTG
ATGGAGCTTG TATACGGCGC AGAAAAGTCT TTGAGCCCCG AAAGGAATCT TGCCGTTGTT
GAGGGTTTCA CGGCGCGTCT TGAAGTGCTC CCTTACGACA GCGACGCGGC GGCTCATACC
GGCATGATCA GAGCCGAACT GGCCAGAGCG GGCACGCCGA TCGGCCCGTA CGATCAAATG
ATTGCAGGAC ACGCCCGCTC TCTAGGCTTG GTTGTCATCA CTAACAACCA GCGTGAATTC
CAGCGCGTCG AGGGGCTGAG GGTAGAAGAC TGGGTAAGCC AATGA
|
|---|
| Protein sequence | MLKYMLDTNI CIFTIKNKPA SVREACNLHH GQLRISAITL MELVYGAEKS LSPERNLAVV
EGFTARLEVL PYDSDAAAHT GMIRAELARA GTPIGPYDQM IAGHARSLGL VVITNNQREF
QRVEGLRVED WVSQ
|
|---|
| |