| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0779 |
|---|
| Symbol | |
|---|
| ID | 3366266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 885579 |
|---|
| End bp | 886862 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637651118 |
|---|
| Product | type III effector HopAH1 |
|---|
| Protein accession | YP_233875 |
|---|
| Protein GI | 66044034 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.487257 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATGA ATACCTCTGT AAACAACAAC AGCCCGGGGT GGTCGCCTGT CTCGTCGGGC
AACCTGGCTC CGAGTCCGGA CTATTCAGGT AAGTCGTCGA GCAATGCCGT GCACTTTCTT
CCTCCGGAAA GTACCCAGCG CTCGCCGAAC ACGGTGAGTT GGGGGAATGG CGCGCCGACA
ACCGCCACCG CCGGGAATGG ACAAGCACGA GGGGGCGATC AAAGTGACTT GATCGAGGCG
TTGACGACGC TGATTCAGGC GCTGCTGAAA CGCTTGCTCG GTGATTCTTC CGCAAGTAAC
TCTTCTGCAA ATAACCCTTC CGAGAACCCG TCCCCTGCTT CGTCCGGGCC AGGTCGGGCT
TCTGCTTCTC CCGGCGGTGC TGCCAGTTCG ACGCCAGACT CAGGACTGTC TGAGCAGTCA
AATCAAGCCC AACCGTTCAA TAACACTGGC TTGGGTTCTC ATGGCGGCGC GAATACGGTT
CCTGACCGGA TTGCGTCTCC TGAGGCAGCG CAAAAAATGG TCGAAGACGT GAAAAATGCC
GGAGGGGGAA CACTTCGCAT CCAGATGACC CATGACCAGA TCAATGACCC GGCGCAAATG
GCCAAACTCA AGGCGATGGT CGATGCCGGC GACAAACAAG GGGTCAAGAT TCAGTTTACG
TTTCGTGACA ACGCCAATGG CGGCGGTGGC AATGTCTTGT CCGGCGACAA GCTCCAACAA
GCCGCCGACG ATGTCAAAAA CGTGGTTTCT GCCCTTGGAA ACCATCCGAG TTTTGTACTC
GATACGTTCA ATGAGGGCGG CAAGAGTGCC ACTCAGGGTT GGGCCGATAT GCAGAGCACG
TTGATCAAGT CAGCCCGCGA CGCTGGTTAC AAAGGCGACA TCGTGGTGGA GGACAGCAAT
TGGGGTGGTG GTCTGACGGC CGGCGGGGAA AGCGGGCTGG TCAAATACGC TGATCAGCTG
AAAGCCGCCA ACGGCAGCAA CAACCCTGGC CTGATCGGCA GCATCCATGA GTACGCCAGC
GGTGCTGATG CCTCTTCGCG TTTGTCATCG GAGATCAAGG CGCTTACGAG CGCGGGCTTC
AAGCCGCAAA TCGGTGAAGT CGGTAACGCC AACTGGACCG GGGGCGGTAA CTTCGAACAG
CGCGACGGCG CCAACCAGGC CGTGAAAGAC AACATGGGCG CCCTGAAAGC GGCCGGGGCC
GATGTGCTGC CATGGATGGA CCAGTTCGAG AACGGCAAGA TCAAACACGA TGTCGGGTTC
TCGAAAGGCG ATCAGTTTTC CTGA
|
|---|
| Protein sequence | MSMNTSVNNN SPGWSPVSSG NLAPSPDYSG KSSSNAVHFL PPESTQRSPN TVSWGNGAPT
TATAGNGQAR GGDQSDLIEA LTTLIQALLK RLLGDSSASN SSANNPSENP SPASSGPGRA
SASPGGAASS TPDSGLSEQS NQAQPFNNTG LGSHGGANTV PDRIASPEAA QKMVEDVKNA
GGGTLRIQMT HDQINDPAQM AKLKAMVDAG DKQGVKIQFT FRDNANGGGG NVLSGDKLQQ
AADDVKNVVS ALGNHPSFVL DTFNEGGKSA TQGWADMQST LIKSARDAGY KGDIVVEDSN
WGGGLTAGGE SGLVKYADQL KAANGSNNPG LIGSIHEYAS GADASSRLSS EIKALTSAGF
KPQIGEVGNA NWTGGGNFEQ RDGANQAVKD NMGALKAAGA DVLPWMDQFE NGKIKHDVGF
SKGDQFS
|
|---|
| |