| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0327 |
|---|
| Symbol | |
|---|
| ID | 3365803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 345887 |
|---|
| End bp | 346837 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637650669 |
|---|
| Product | sigma-54 factor, interaction region |
|---|
| Protein accession | YP_233437 |
|---|
| Protein GI | 66043596 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.768789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.257375 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTTC ACGAAAACTT CGGCCAGCCG CTGCTGACCT TTCCCGATGC GGAAAAAAGC
CCACTGAGCA TTCGCGCCAA GGCGCTGGTG TTCATCGATC CACGCTCGCG CCGGTTGCGT
GAAGAAATGG AGCAACTGGC TCCCCGTTCT CTTCCGGTAC TGATCCGTGG CGAGTCCGGG
ACCGGCAAGG AATTGCTGGC CCGGCACATT CATCGCGGCA GTGATCGCTC GGGTTTGTTC
GTTTCAGTGA ACTGCGGTGC CATCAGCCCT ACATACGCCG ATGCCGAATT GTTCGGCTAT
GCCGCCGGAG CCCACAGTGG GACGGTCAGC AGCCGCGCGG GATGGTTCGG TTCGGCCAAT
GGCGGCACCT TGTACCTGGA CGAGATCGGC GACCTGCCGT TGCCGATCCA GGTCAAGCTG
CTGGCGGCCC TTGAGAATCA CGAAGTCACG CGAGTGGGCG CGCAGCAGCC GAGCCCGGTC
GATGTGCGTC TGGTCGCCGC CACCAGTATC GATCTGGCGC AGGCCGTGGC TGCCGGGAAA
TTCCACGAGC GTCTTTATCA TTACCTGAGC GAGGGCCGCC TCGATCTGCC TGCATTGCGC
GAGCAGCCGG GCAACATCCT GCCGTTGGCC GAATATTTTG TGGGGATCTA CAGCCAGCGT
CTGAACCTGC CGGTGCAACT GATCAGCGAG GAGGCGCAGC GGACGCTGGA GGCCCACAGC
TGGCCCGGCA ATACCCGTGA ACTGGAGAAC GTCATTCACT TCGCCCTGCT GGTCAGCAGC
GGTGATGAAA TTCGCGCACA GGATATCAAT CTGCCGGACA TCGCCGATCC GTTGACGCTG
ATCGAGCGCC AGACGCAGCT ATTGCTCAAC GGTAGTGATG GCAGGCAGCT TTCCGCGCTC
AGGCAATTGC TTGAAACAGT CACCTCGGAG CTGGCGCGGC GACCTGCTTG A
|
|---|
| Protein sequence | MSLHENFGQP LLTFPDAEKS PLSIRAKALV FIDPRSRRLR EEMEQLAPRS LPVLIRGESG
TGKELLARHI HRGSDRSGLF VSVNCGAISP TYADAELFGY AAGAHSGTVS SRAGWFGSAN
GGTLYLDEIG DLPLPIQVKL LAALENHEVT RVGAQQPSPV DVRLVAATSI DLAQAVAAGK
FHERLYHYLS EGRLDLPALR EQPGNILPLA EYFVGIYSQR LNLPVQLISE EAQRTLEAHS
WPGNTRELEN VIHFALLVSS GDEIRAQDIN LPDIADPLTL IERQTQLLLN GSDGRQLSAL
RQLLETVTSE LARRPA
|
|---|
| |