Gene Psyr_0305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0305 
SymbolglpT 
ID3365781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp325019 
End bp326368 
Gene Length1350 bp 
Protein Length449 aa 
Translation table11 
GC content61% 
IMG OID637650648 
Productsn-glycerol-3-phosphate transporter 
Protein accessionYP_233416 
Protein GI66043575 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00712] glycerol-3-phosphate transporter
[TIGR00881] phosphoglycerate transporter family protein 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.886958 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGGGT TTTTCCGTCC TGCCAGGCAT CAGGCACCCC TTCCCGAAGA AAAGGTCGAC 
AGCACCTATC GGCGTCTGCG CTGGCAGATC TTCGCAGGCA TCTTTATCGG CTATGCGGGT
TACTACCTGC TGCGCAAGAA TTTCTCGCTG GCGATGCCGT ATCTGATCGA CGAAGGCTAT
ACGCGTGGCC AGCTGGGCGT GGCGATGTCT GCCATTGCCA TTGCCTACGG CTTGTCGAAA
TTCCTCATGG GCATCGTTTC GGATCGCTCC AACCCGCGTT ACTTCCTGCC GTTCGGCCTG
CTGGTCTCTG CCGGGATCAT GTTCATCTTC GGCTTCGCGC CGTGGGCGAC GTCCAGTGTC
ACGATCATGT TCGTGCTGCT GTTCATCAAT GGCTGGGCAC AGGGCATGGG CTGGCCGCCG
AGCGGGCGGA CAATGGTTCA CTGGTGGTCG CAGAAAGAGC GCGGCGGTGT GGTGTCGGTG
TGGAACGTGG CGCACAACGT CGGCGGCGGC CTGATCGGCC CGCTGTTCCT GCTCGGCATG
GGCTGGACCA ACGACTGGCA TGCGGCGTTC TACGTGCCGG CGGCGGTTGC GTTGCTGGTC
GCGGTGTTCG CCTTCGCGAC CATGCGTGAC ACCCCGCAAT CGGTCGGCCT GCCGCCTATC
GAGCACTACA AGAACGATTA CCCGGAAGGC TACGATGCCA GCCACGAGGA AGAATTCAGC
GCCCGGGAGA TCTTCGTCAA GTACGTGCTG CGCAACAAGT TCCTGTGGTA CATCGCCATG
GCCAACGTGT TCGTTTATCT GCTGCGCTAT GGCGTACTGG ACTGGGCACC GACCTATCTC
AAGGAAGCCA AACACTTCAC GGTCGACAAG ACCTCCTGGG CTTACTTTCT GTACGAGTGG
GCGGGCATTC CGGGCACGCT GCTGTGCGGC TGGATGTCGG ACAAGATCTT CAAGGGCAAT
CGCGGCCTGA CCGGCATGGT GTTCATGTTT CTGGTGACCA TCGCCACGCT GGTGTACTGG
CTGAACCCTG AAGGCAATCC GACCGTCGAC ATGATCGCGC TGGTGTCCAT CGGTTTCCTG
ATCTACGGAC CGGTGATGCT GATCGGCCTG CAGGCGCTGG AACTGGCACC GAAGAAGGCA
GCAGGCACGG CCGCCGGCTT TACCGGGCTG TTCGGCTATC TGGGCGGGTC GGTCGCGGCC
AGCGCAGCGA TGGGCTACAC GGTTGACCAC TTCGGCTGGG ATGGCGGCTT CGTGCTGTTG
ATCGGCGCGT GCATTCTGGC GATGGTGTTC CTTGCGCCGA CGCTGCGGCA CAAACAGGTC
GCCAGCACAT CTCGCGACAC CAAAGGCTGA
 
Protein sequence
MFGFFRPARH QAPLPEEKVD STYRRLRWQI FAGIFIGYAG YYLLRKNFSL AMPYLIDEGY 
TRGQLGVAMS AIAIAYGLSK FLMGIVSDRS NPRYFLPFGL LVSAGIMFIF GFAPWATSSV
TIMFVLLFIN GWAQGMGWPP SGRTMVHWWS QKERGGVVSV WNVAHNVGGG LIGPLFLLGM
GWTNDWHAAF YVPAAVALLV AVFAFATMRD TPQSVGLPPI EHYKNDYPEG YDASHEEEFS
AREIFVKYVL RNKFLWYIAM ANVFVYLLRY GVLDWAPTYL KEAKHFTVDK TSWAYFLYEW
AGIPGTLLCG WMSDKIFKGN RGLTGMVFMF LVTIATLVYW LNPEGNPTVD MIALVSIGFL
IYGPVMLIGL QALELAPKKA AGTAAGFTGL FGYLGGSVAA SAAMGYTVDH FGWDGGFVLL
IGACILAMVF LAPTLRHKQV ASTSRDTKG