Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyc_1660 |
Symbol | topA |
ID | 3515628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter arcticus 273-4 |
Kingdom | Bacteria |
Replicon accession | NC_007204 |
Strand | - |
Start bp | 2055885 |
End bp | 2058563 |
Gene Length | 2679 bp |
Protein Length | 892 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637670356 |
Product | DNA topoisomerase I |
Protein accession | YP_264942 |
Protein GI | 71066215 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000915276 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.794129 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAAAC CCACAACCAA AAAAAGCGCA GCGCCCGCTG CAGACAAACC CAAAGGCAGC CCAAAAGGTA AGTCTTTAGT GATTGTTGAA TCACCTGCCA AGGCAAAAAC CATCAATAAA TACTTGGGTG ATGATTTTAT CGTGCGCTCA AGTATCGGTC ATGTCCGAGA TTTGCCCGTT GGTGCGAGCA AAAGCGCAAA GAAACCAGCA ACGACCAAAA AAGATGACAT CCTGACCAAA GAAGAAAAAA CTCAGCAAGC ATTGGTACGG CGCATGGGTA TTGACCCTGA GCATGATTGG GCGGCAGTCT ATGAAGTGTT GCCAAACAAG ACCAAGGTCA TTAAAGAGCT GAAAGCCTTA GCCAAAGACG CTGATAAAAT CTATCTCGCG ACGGATATGG ATAGAGAGGG AGAAGCCATT GCTTGGCATC TCAAAGAAGT GATTGGCGGC GCAGACAGTA AATATGAGCG CGTGGTCTTT AACGAGATTA CCAAATCTGC TATTCAAAAT GCTTTTAAGC AGCCTTCTAA ACTTGATATT GACCGCGTCA ATGCGCAACA AGCGCGGCGC TTTTTAGACC GTGTGGTTGG TTTTATGGTA TCGCCATTAC TGTGGCAAAA GGTCGCGCGC GGTTTATCTG CGGGTCGCGT ACAGTCAGTT GCTATGCGCT TGGTCGTTGA GCGTGAACAC GAAATCCGCG CCTTTATTCC AGAAGAGTAT TGGCAGATTC ATGCCGATAC CCATATTGTT GATAATAAAG ATAAAAAAGC CACAGACGCT GAGCAAATTG GTATTCGTTT AGAAGCTACC AAGCAAGGCG GCAAAACGCT AAAGCTCGTT AATAAAGAGC AGACCGATAA AGTATTAGAT GTTCTTAAAG CAAATGACTT TATCGTTAAA GAACGTGAAG AAAAGCCAAC GCAGTCACGT CCAAGCGCGC CTTTTATTAC CTCGACTTTG CAACAAGCTG CCAGTACAAG ATTAGGATTT TCGGTTAAGA AAACCATGAT TTTAGCGCAG CGCTTATATG AAGCCGGTCA TATCACTTAT ATGCGTACCG ATTCAACCTT TTTATCAGGC GATGCGCTGG CTGCTGTACG TGGTTATATT GAAGACAGCT ATGGCGCAAA ATATGTGCCA GAAAAGCCAA CCTTCTATGG TAATAAGCAA GGCGCACAAG AGGCGCATGA AGCGATTCGT CCGTCTAACG TCAATATGAA ATCAACGCAG CTTAAAGCTG TTGAGCGTGA TGCGATACGT TTGTATGAGC TAATTTGGCG TCAGTTTGTG GCCTGTCAGA TGCTACCAGC AAAATATTTA TCAGTAAATT TATTCGTTGC TGCTGATGAT GTCGAGCTAA AAGCGCGCGG TCGCACCTTG GTATTTGATG GTTATACCAA AGTCATGCCA CCTGCCAAGA CCGACGACAA TTTATTACCT GATGTCAAAA AAGGGGATAA GTTAACGGTA GATAAACTTG ATCCAAGCCA GCATTTTACC AAGCCGCCAC CGCGCTATAC TGAGGCAAGC TTGGTTAAAG AGCTTGAGAA AAAAGGCATT GGTCGTCCAT CGACATATGC TTCTATCATC TCGACCATTC AAGATCGTGG TTATGTGAAG CTCGAGAATA AGCGTTTATT TGCCGAAAAA ATGGGTGATA TTGTCACTGA CAGACTGACG GCAAGTTTTC CGGATTTGAT GGATTATACT TTTACCGCAG CGTTAGAAGA TAAACTGGAC CATGTTGCTG AAGGTGATAC AAACTGGAAG GATGTACTTG ATAATTTCTA CGGGGATTTC AAGACTACCC TTGATCGCGC TAAAGAAAAA GACGGCATGC GCCCGAATGA TCCGACCGAT GTACCAGACG TGCATTGCGA TCTTTGTGAT CGTCCGATGC AACTGCGTAC CGGTTCTACC GGTGTATTCT TAGGTTGTAC CGGTTATAAC TTACCGCCGA AAGAACGCTG TAAAGGCACT AAGAACTTAA TGCCAGTCGA AGCTTTTGCC AATCTTGATG ATGCAGAAGG TGATGATGAA GCGGCAGAAG TCCGAGATTT GATGGAGAAA AAGCGTTGCC CGAAATGTAG CACGGCAATG AATGGTTATA TTGTAGATGG CGGTCTTAAG CTACATGTTT GTGGTAATAA TCCTGATTGT GATGGTTATG TCTTAGAAGA AGGCAAGTTT GAAGTTCCTG GTTCTGACTC TCCAACCATT GACTGCAATA AGTGCGATGG ACAAATGGAG CTTAAGACGG GACGCTTTGG TCCTTACTTC GCTTGCCAGC AATGTGACAA TACCCGTAAA GTGCTCAAAA CGGGTGAAGC AGCACCGCCG CGCATGGATC CTATTCATCT GCCAGAGCTA AAATCAGTGA AGCATGAGGA TTACTTTATC TTGCGTGAAG GGGCTGCCGG GATGTTCTTA GCAGCATCTA AGTTTCCTAA AGTACGGGAA ACGCGTCCAC CAAAGCTTGC TGAGCTAAGA GAGATTAAAG ATAAAATGGA AGATAAATTC CAGTATCTGT TTGAAGGACC AGATGAAGAT CCTGATGGTA ATCCTACGAT TCTGCGTTGG TCACGTAAGA AAAAAGAGCA GTATATTGGC TCTGAGAAAA ATGGTAAAGC CACACGCTGG GGCGTGTACT GGCGCAAAGG TGAGTGGGTA GAGGAGTGA
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Protein sequence | MTKPTTKKSA APAADKPKGS PKGKSLVIVE SPAKAKTINK YLGDDFIVRS SIGHVRDLPV GASKSAKKPA TTKKDDILTK EEKTQQALVR RMGIDPEHDW AAVYEVLPNK TKVIKELKAL AKDADKIYLA TDMDREGEAI AWHLKEVIGG ADSKYERVVF NEITKSAIQN AFKQPSKLDI DRVNAQQARR FLDRVVGFMV SPLLWQKVAR GLSAGRVQSV AMRLVVEREH EIRAFIPEEY WQIHADTHIV DNKDKKATDA EQIGIRLEAT KQGGKTLKLV NKEQTDKVLD VLKANDFIVK EREEKPTQSR PSAPFITSTL QQAASTRLGF SVKKTMILAQ RLYEAGHITY MRTDSTFLSG DALAAVRGYI EDSYGAKYVP EKPTFYGNKQ GAQEAHEAIR PSNVNMKSTQ LKAVERDAIR LYELIWRQFV ACQMLPAKYL SVNLFVAADD VELKARGRTL VFDGYTKVMP PAKTDDNLLP DVKKGDKLTV DKLDPSQHFT KPPPRYTEAS LVKELEKKGI GRPSTYASII STIQDRGYVK LENKRLFAEK MGDIVTDRLT ASFPDLMDYT FTAALEDKLD HVAEGDTNWK DVLDNFYGDF KTTLDRAKEK DGMRPNDPTD VPDVHCDLCD RPMQLRTGST GVFLGCTGYN LPPKERCKGT KNLMPVEAFA NLDDAEGDDE AAEVRDLMEK KRCPKCSTAM NGYIVDGGLK LHVCGNNPDC DGYVLEEGKF EVPGSDSPTI DCNKCDGQME LKTGRFGPYF ACQQCDNTRK VLKTGEAAPP RMDPIHLPEL KSVKHEDYFI LREGAAGMFL AASKFPKVRE TRPPKLAELR EIKDKMEDKF QYLFEGPDED PDGNPTILRW SRKKKEQYIG SEKNGKATRW GVYWRKGEWV EE
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