| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1640 |
|---|
| Symbol | kdsA |
|---|
| ID | 3515608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 2026896 |
|---|
| End bp | 2027771 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637670336 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | YP_264922 |
|---|
| Protein GI | 71066195 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.143732 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000150739 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAATC TACTAACCGC ACAGTCGCAT ATTCAGCTTA ATACGCCCAA TAATAAAAGC
ATCAATATCG GTAACGATCA GCCATTTGTA TTGTTTGGTG GTATGAATGT CTTAGAGTCC
AAAGAGATGG CATTTGAGAT TGCCGAGCAG TATGTCGATA TATGCCAGCG TTTGGGTATT
GGCTATGTAT TTAAAGCCAG CTTTGACAAA GCCAATCGCT CAAGCCTGAC CTCGTATCGT
GGTCCCGGAC TAGAAAAAGG TATCGATTGG CTCGGGCAAA TCAAAGAAAA ATTCCAAGTA
CCCATTATCA CGGATGTCCA CGAACCTTAT CAAGCGGCAC CGGTTGCTGA AGTGGCGGAT
ATTATTCAGC TGCCTGCGTT TTTATCGCGT CAGACGGATT TAGTCCATGC AATGGCAAAG
ACCGATGCAA TCATTAATAT CAAAAAAGCC CAATTTTTAG CACCGCATGA GATGCGCCAT
ATCGTCAATA AATGTCTTGA GGGCGGTAAC GATAAGCTTA TTCTTTGTGA GCGTGGTAGT
GCCTTTGGTT ATAATAATTT GGTGGTCGAT ATGCTGGGTT TTGATACCAT GAAGCAGATG
GAAATCCCGG TGTTCTTTGA TGTGACCCAT AGCTTGCAGC AGCCGGGCGC GCGTAGCGAT
AGCGCGGGCG GACGCCGTGA GCAAATTACA ACGCTTGCAC GTGCGGGTAT GGCAACCGGA
TTGGCAGGTC TGTTTTTAGA GGCGCATCCC AATCCAGAAA CGGCAAAATG TGATGGTCCC
TGTGCATTGC GTATGAGCCA GTTAGAGCCG TTCTTACGTC AGCTTAAGCA GCTTGATGAC
TTGGTAAAAG GCTTTGAGAC CTTGGATACT CATTAA
|
|---|
| Protein sequence | MENLLTAQSH IQLNTPNNKS INIGNDQPFV LFGGMNVLES KEMAFEIAEQ YVDICQRLGI
GYVFKASFDK ANRSSLTSYR GPGLEKGIDW LGQIKEKFQV PIITDVHEPY QAAPVAEVAD
IIQLPAFLSR QTDLVHAMAK TDAIINIKKA QFLAPHEMRH IVNKCLEGGN DKLILCERGS
AFGYNNLVVD MLGFDTMKQM EIPVFFDVTH SLQQPGARSD SAGGRREQIT TLARAGMATG
LAGLFLEAHP NPETAKCDGP CALRMSQLEP FLRQLKQLDD LVKGFETLDT H
|
|---|
| |