Gene Psyc_1301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_1301 
Symbol 
ID3515258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp1566327 
End bp1568375 
Gene Length2049 bp 
Protein Length682 aa 
Translation table11 
GC content44% 
IMG OID637669989 
ProductBCCT family betaine/choline/carnitine/glycine transporter 
Protein accessionYP_264585 
Protein GI71065858 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAACA AATCCTCCCG TTCCACTATT TTATTACCGG TATTTGTGCC GGCAGCAGTC 
ATTATGCTGC TATTAGTGAT TGGTACAGCC ATTAATCCGG AGTCTGCTGG CGAGTTGTTT
AGCACCGTTC TAAGTTTTAC CACCGAGACT TTCGGTTGGT TCTATATGTT AGCAGTGGCC
ATATTTTTGA TGTTCATCAT TGTCTTGGCG TTCTCTTCTT ATGGCAGTAT CAAACTGGGT
CCAGATCATG CGGAGGCAGA GTATAATTTT CTTGAATGGT TTGCCATGCT GTTTTCTGCA
GGGTATGGCA TCGCTTTACT ATTCTATGGC GTAGCAGAGC CAGTTATACA CTTTGCCAGT
CCGCCGCTCT CAACACCGCA GACTATTGAG GCCGCCAAAG AAGCAATGCA AATTGCCTAT
TTTCACTGGG GCTTTCATAT TTGGGCGATT TATGGCGTGG TCGGTTTGTC ACTGGCATAT
TTCTCTTTTC GTCATGGCTT GCCCTTGTCA ATGCGCTCAA CACTATACCC ATTAATTGGT
GATAAAATTT ATGGTCCGAT TGGACATACC GTTGATGTAT TTGCCATTGT GGGCACGATG
TTCGGTATCG CGACCAGTTT GGGGATTGCT GTATCGCAAA TCAACGCAGG CGTAAATTAT
CTATTTCCAA ATACGGTACC GGTCAGCATG ACGGTTCAGG TTATTATTAT TGCGCTGGTG
ACACTAGCAG CTTTGATATC TGTCCTCGCT GGCATGGACA AAGGCGTAAA GCGACTATCG
ATTTTGAACA TGGTGTTAGC AACGGGACTG ATGCTGTTTG TCTTTATTGT GGGTCCAACC
ATATTTATTC TCAACGCCTT TATGGAAAAT ACAGGCAGCT ATTTAGGTAA TATCGTTGAG
CGTACTTTTA GCTTGCAAGC CTATCAATCG AGTGATTGGA TCGGTAGTTG GACGCTCTTT
ATCTTTGCAT GGACGATTGC TTGGGCGCCC TTTGTCGGAT TGTTTATTGC TAAGATTAGT
CGGGGGCGTA CTATCCGTGA ATTCGTATTG GGCGTAATGT TGGTACCAAC ATTCTTTACG
TTCTTTTGGT TCGCAGTTTT TGGCGATACA GCGCTGCATA TGATTATGGT TGATGGCTAC
GATGCGCTTA TCACTGAAGT ACAAAATAAC CAAGCGATTG CATTGTTTAA ATTATTAGAG
AACTTGCCTT TCTCTCAGAT AGTGTCGTCA TTGACAGTAT TATTGATTAT CACTTTTTTT
GTGACCTCAT CAGATTCAGG GTCGTTGGTT ATTGACTCCC TTGCAGCGGG TGGACGTAGT
GATACGCCAT GGTGGCAACG TACTTTTTGG GTAGTGACTG AAGGCGCAGT TGCCGCTGTT
CTGTTGGTAG CTGGTGGATT AACAGCGTTA CAGACCGCAG CTATTGTCAG CGCCTTACCC
TTTGCTGTTA TTATATTGAT TTCAATATTT GGGATGTGGC GTGCGCTACG TATTGAAGGT
CATCGTAACC AGAGTCTAGG TAACGATAAT AGAATCCCGC CGCATCTGCT TAAGCCATCC
GCATGGCGTG AGCGCATTGA TTATATGACG GATAAGCCGA CTCGCGATAA AGTTTTAAGC
TATATCCAAG AGACTATTAT GCCGTCTATG GTAGAAGTCT CAGAGAAGTT TGCAGAAACT
GGCTGGACGA CTGAAGTCAA TTATGATGCG ATTAATAATC GCGCGGTATT GGAGTTACAA
CGAGGCAGTG ATGTCGAGTT CTGGTATGAG GTACGCTTAT CTGAGCATGA TACGCCAGAT
TATTACACTG AAGATAACGC TGATAAATTA CCGCAACAGC ATGATCATCG CGCTGAAGTA
TATCTGCGCC GTGGTGGTCA GACCTACGAC TTATATGGTT ATGAGTCCGA GTCAGTCATC
AATGACATTA TTGATCAATT CGAGAAATAT CTACACTTTG TGAACGTCTC GCCAGATATT
CTACCGTGGC GTATGCAAGA GCATGATGAA GATATTACAC TGGAGCAGGG CAGTGTATTT
GATAAATAA
 
Protein sequence
MKNKSSRSTI LLPVFVPAAV IMLLLVIGTA INPESAGELF STVLSFTTET FGWFYMLAVA 
IFLMFIIVLA FSSYGSIKLG PDHAEAEYNF LEWFAMLFSA GYGIALLFYG VAEPVIHFAS
PPLSTPQTIE AAKEAMQIAY FHWGFHIWAI YGVVGLSLAY FSFRHGLPLS MRSTLYPLIG
DKIYGPIGHT VDVFAIVGTM FGIATSLGIA VSQINAGVNY LFPNTVPVSM TVQVIIIALV
TLAALISVLA GMDKGVKRLS ILNMVLATGL MLFVFIVGPT IFILNAFMEN TGSYLGNIVE
RTFSLQAYQS SDWIGSWTLF IFAWTIAWAP FVGLFIAKIS RGRTIREFVL GVMLVPTFFT
FFWFAVFGDT ALHMIMVDGY DALITEVQNN QAIALFKLLE NLPFSQIVSS LTVLLIITFF
VTSSDSGSLV IDSLAAGGRS DTPWWQRTFW VVTEGAVAAV LLVAGGLTAL QTAAIVSALP
FAVIILISIF GMWRALRIEG HRNQSLGNDN RIPPHLLKPS AWRERIDYMT DKPTRDKVLS
YIQETIMPSM VEVSEKFAET GWTTEVNYDA INNRAVLELQ RGSDVEFWYE VRLSEHDTPD
YYTEDNADKL PQQHDHRAEV YLRRGGQTYD LYGYESESVI NDIIDQFEKY LHFVNVSPDI
LPWRMQEHDE DITLEQGSVF DK