Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyc_0881 |
Symbol | |
ID | 3514881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter arcticus 273-4 |
Kingdom | Bacteria |
Replicon accession | NC_007204 |
Strand | + |
Start bp | 1049066 |
End bp | 1052248 |
Gene Length | 3183 bp |
Protein Length | 1060 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637669569 |
Product | putative type I site specific deoxyribonuclease HsdR |
Protein accession | YP_264168 |
Protein GI | 71065441 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0350782 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAATTCA CCGAAGACAG ACTTGAGCAA GCCATTATTG AGCTACTAGC AGCGGAAGGC TATCCGCACA CGGTTGGTGA AGCGCTTGAC CGCAACCCTG ATGATGTGCT GATTAAGTCT GACCTTCGAC AGTTTCTAGC GACCCGTTAT AGAGATGACT TGATCACTGA TTACGAGATT GAGTCCATCA TTCATAAGCT CGAATACCTT CCTGCCTCCG ACCTGTACGA AACCAACAAA GCCATCATGA AGTTTGTCGC TGATGGCTTT TTACTCAAGC GTGAAGACCA TACCCAAAAA GACTTATACA TCCAGCTGAT TGATTATGAG GCACTCGATA ACAATCGCTT TCGCATCGTC AATCAGATGG AAATACAAGG TTTTGAGCGG CGTATTCCTG ATGGCATTCT CTATATCAAT GGCTTACCAC TGGTGGTGTT TGAGTTTAAG AGCAGCATCC GTGAAGATGC CACCATGTTT GATGCCTATA CCCAGCTGAC CACCCGTTAT AAGCGCGATA TTCCAGAGCT GTTTAAATAC AACGCCCTAT GCGTCATCAG TGATGGGGTC AACTCAAAAA TGGGGTCATT CTTTGCCCCT TATGAGTTTT ACTATTCTTG GCGCAAAGTG ACGGGCGATG AGAAGCTTGA GAAGGATGGC ATCCATTCCT TACTAACGAT GATAAGCGGC TTATTTGATA AAGCACGTTT GCTTGATGTC ATTCGAAACT TTATCTATGT GCCTGACAAG TCAAGCAAGG AAGAGAAAAT CGTTTGTCGT TATCCACAGT ATTATGCCGC CACCAAACTG TTTGACAATA TTAAGCGCCA TATGAAAGTG CTGGATACAA ACGGCAAGTT TGATGAGAGT GATGCTTTAC GAGACGGTAA AGGTGGTACG TACTTTGGCG CGACTGGCTG TGGTAAGAGC TTTACCATGC TATTTCTAGC CCGTCTGCTG ATGAAAGACG CTGCGCTTGG TAGTCCAACC ATTATCTTAA TCACTGACCG CACCGATTTG GATGATCAGT TATCAAAAAC CTTTACCAAT GCCAAAACCT ATATTGGTGA TGACGAAATC ATCAGTGTCG AGAGTCGAGC TGAGCTACGA GAGAAGCTGA AAGGGCGTAA AAGTGGTGGC GTGTTCCTGA CGACCATTCA TAAGTTCACC GAAGACTTAG CCTTACTGAC CGAGCGTACC AACGTCATCT GTATCTCTGA TGAAGCGCAC CGTAGCCAAA TCAATCTCCA ACAAAAAATC ACCGTCACCG AAGATGGGGT CAAAAAGACC TACGGCTTTG CTAAATACCT GCATGATTCA TTGCCTAATG CTACTTACGT CGGCTTCACA GGTACGCCAA TTGATGCCAC CCTAGATGTC TTTGGTCCAG TCGTTGATAG CTATACCATG GTCGAGTCGG TATTCGATGA AATCACTGTG CGTATTGTCT ATGAAGGTCG CGCTGCCAAA GTACTCCTTG ATAGCAAGCA GCTCGATGAA GTAGAAAAGT ATTACAAGCA CAGCGTAGAA TCGGGCGCCA ATGAGTACCA GATAGATAAA AGCAAAAAAG CCATGGCGAG TATGTCTACC ATACTAGTTG ATCCTGACCG CATCCGCGCC ATCGCAGAAG ACTTCGTTCA GCATTATGAA GCGCGCGTTG CTGAGGGCAC CACACAGAAA GGCAAGGCGA TGTTTGTCTG TAGTAGCCGT GAAGCCGCCT ATCAGTTATA TAAAGACATC ATAGAGCTGC ATCCTGAATG GGATGAGATC AGAGCGTGCG AGGAAGGCTC AACCTTATCT GAAAGCGACA AGAAAAAAGT CATGCCTATA GAGCGAGTCA AAATGATCAT GACTCGTAAC AAGGACGATG AAAAAGGCAT GTGGGACAAT CTTGGTAATA AAGACTACCG CAAAGAGCTC GACCGCCAGT TTAAAAACGG CAAGTCTAAC TTTAAGATCG CCATCGTCGT CGATATGTGG CTTACAGGCT TTGACGTGCC ATTTCTAGAT ACCATCTACA TTGATAAACC GCTGCAAAAG CATAGCCTGA TTCAAACCAT CTCACGGGTC AACCGTAAGT TCGAAGGCAA AGAAAGCGGC TTAGTGGTTG ATTACATTGG CATCAAAAAG CAGATGAACC TTGCGCTCTC GCATTACACC GGCGGTCAGA TTCAAAACTT AGAAGATATC CAAAAATCAG TCGTGGTAGT GAAAGACCAC TTAGACCTAC TGGATACGGT CTATCATAAG TTCGACTCTA GCCTTTACTT CAACGGCACG CCACTAGAGC AGCTCAATTG CTTAAACGCG GCGGCTGACT TTGCCCTGCA ATCCAAAAAG CTAGAAAAGC GTTTTATGGA TTTAGCCAAG CGTCTTAAGT CTGCCTATGA TATTTGCGTG GGTAGTGAGG CGCTAACCAA GGCGCACAAG GACAAGATTC ATTACTACTT AGCTATTCGT ACCATCATCT TTAAAATCAC CACCGGCGGC GCGCCTGACG TTGAACAGAT GAACCAAAAG GTACGTGATC TGGTTAAAGA TGCGCTAATG AGTGACGGGG TAGAAGAAAT CTTTAAGCTC GGTGATAACA CCGACGGTGA AATCGATATC TTCGATGAAG ACTACTTAGC CAAGCTTGAG GTGATTAAGC AGCCCAATAC CAAGTTAGAG CTGCTACAAC AGCTGCTCGC AAAAGCCATT GGTGAGCTGA AAAAGACCAA CAAGGTGAAG GGTGTCGATT TCAGTAAAAA AATGAATGCG CTCGTTGAGA AGTATAACGA CCGCGACGAG AACGATATCT TAAACTCTAA GGTCTTCAAT GATTTTACTG ACCATATTAT CGACTTAATA CATGGCGTGA AGAAAGAGAT GCAAGCTTTT GGTGAGATGG GCATTGATAT CGAAGAAAAA GCTTTCTATG ATATTTTGCT ACTGTTAGCT CATAAGTATG ATTTTAGCTA TCCAGAGGAT AAACTCATTG AGTTATCCAA AGAGGTCAAA AATCTTGTAG ACGATAAAGC TAAGTATACT GACTGGAATA AAAGAGACGA CATTAAAGCT GAGCTGGAAT TTGATCTGAT GATATTGCTC GATGAGTGGG GCTATCCACC TGTTGACTCA AAAGAGGTCT ATAAAGAGAT ATTTGAGCAG GCTGAGAATT TTAAGAAGAA TAGGGTGGTT TAG
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Protein sequence | MKFTEDRLEQ AIIELLAAEG YPHTVGEALD RNPDDVLIKS DLRQFLATRY RDDLITDYEI ESIIHKLEYL PASDLYETNK AIMKFVADGF LLKREDHTQK DLYIQLIDYE ALDNNRFRIV NQMEIQGFER RIPDGILYIN GLPLVVFEFK SSIREDATMF DAYTQLTTRY KRDIPELFKY NALCVISDGV NSKMGSFFAP YEFYYSWRKV TGDEKLEKDG IHSLLTMISG LFDKARLLDV IRNFIYVPDK SSKEEKIVCR YPQYYAATKL FDNIKRHMKV LDTNGKFDES DALRDGKGGT YFGATGCGKS FTMLFLARLL MKDAALGSPT IILITDRTDL DDQLSKTFTN AKTYIGDDEI ISVESRAELR EKLKGRKSGG VFLTTIHKFT EDLALLTERT NVICISDEAH RSQINLQQKI TVTEDGVKKT YGFAKYLHDS LPNATYVGFT GTPIDATLDV FGPVVDSYTM VESVFDEITV RIVYEGRAAK VLLDSKQLDE VEKYYKHSVE SGANEYQIDK SKKAMASMST ILVDPDRIRA IAEDFVQHYE ARVAEGTTQK GKAMFVCSSR EAAYQLYKDI IELHPEWDEI RACEEGSTLS ESDKKKVMPI ERVKMIMTRN KDDEKGMWDN LGNKDYRKEL DRQFKNGKSN FKIAIVVDMW LTGFDVPFLD TIYIDKPLQK HSLIQTISRV NRKFEGKESG LVVDYIGIKK QMNLALSHYT GGQIQNLEDI QKSVVVVKDH LDLLDTVYHK FDSSLYFNGT PLEQLNCLNA AADFALQSKK LEKRFMDLAK RLKSAYDICV GSEALTKAHK DKIHYYLAIR TIIFKITTGG APDVEQMNQK VRDLVKDALM SDGVEEIFKL GDNTDGEIDI FDEDYLAKLE VIKQPNTKLE LLQQLLAKAI GELKKTNKVK GVDFSKKMNA LVEKYNDRDE NDILNSKVFN DFTDHIIDLI HGVKKEMQAF GEMGIDIEEK AFYDILLLLA HKYDFSYPED KLIELSKEVK NLVDDKAKYT DWNKRDDIKA ELEFDLMILL DEWGYPPVDS KEVYKEIFEQ AENFKKNRVV
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