| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0653 |
|---|
| Symbol | capD |
|---|
| ID | 3514393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 776379 |
|---|
| End bp | 777377 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637669343 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_263946 |
|---|
| Protein GI | 71065219 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0235558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.660633 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAGTA ATAGTACTAT TCTGATTACC GGCGGTACAG GATCATTTGG AAACACTTTT
GTTCCCATGG TGCTAGAAAA ATATAATCCT AAAAAGGTGA TTATCTTCTC ACGTGATGAG
ATGAAGCAGT GGGATATGGC AAAAAAATTC GTCGGTGATG ATAGGGTTCG ATTTTTCATC
GGTGATGTTC GTGATAAGGA ACGCTTATAT CGCGCACTAG ATGGCGTTGA TTATGTAGTA
CATGCTGCTG CCACTAAGAT TGTACCGACT GCTGAATACA ATCCATTTGA ATGTGTGAAA
ACCAATATCA ATGGTGCCAT GAACTTAATT GATGCTTGTA TTGATAAAGG CGTTAAAGGT
GTCGTTGCGC TATCGACAGA TAAAGCCAGT AGTCCAATCA ACCTTTATGG TGCTACTAAA
CTTGCCTCTG ATAAATTGTT TGTAGCAGGT AACTCTTATT CTGGAGAGCA TGGGACCAAG
TTTTCAGTTG TCCGTTACGG AAATGTGATG GGCTCTCGTG GTTCAGTTAT TCCATTCTTT
ATGTCTATTA AAGATAAAGG TGTGTTGCCT ATTACAGACG ATCGTATGAC TCGGTTTATG
ATTTCATTGG AAGATGGGGT TAAACTGGTT TGGCATGCAT TCGAAGATAT GGTGGGTGGT
GAAATTTATG TCAAAAAAAT TCCATCAATG AAAATGACAG ATTTAGCTAG AGTTGTTGCG
CCAGAAGCAA AGCAAGAAGT TATTGGTATC CGCCCAGGTG AAAAGCTACA TGAGCAAATG
ATTAGCGTTG AAGATGCTTA CTATACCTAC GAGTATCCTG AGCACTTTAA GATTTTACCT
ACCATTAATA AATGGGCAAA TGATCCTGCA AGAATTAAAG ACGGTAAACG TGTGCCTGAA
GGATTTGAAT ACGCTAGTGA TAACAATCCA GAATGGATGA GTGATACTGA TTTACAAGAA
TGGATTGACA CTAACCGTGA TAAAATCGGG AGCATCTAA
|
|---|
| Protein sequence | MLSNSTILIT GGTGSFGNTF VPMVLEKYNP KKVIIFSRDE MKQWDMAKKF VGDDRVRFFI
GDVRDKERLY RALDGVDYVV HAAATKIVPT AEYNPFECVK TNINGAMNLI DACIDKGVKG
VVALSTDKAS SPINLYGATK LASDKLFVAG NSYSGEHGTK FSVVRYGNVM GSRGSVIPFF
MSIKDKGVLP ITDDRMTRFM ISLEDGVKLV WHAFEDMVGG EIYVKKIPSM KMTDLARVVA
PEAKQEVIGI RPGEKLHEQM ISVEDAYYTY EYPEHFKILP TINKWANDPA RIKDGKRVPE
GFEYASDNNP EWMSDTDLQE WIDTNRDKIG SI
|
|---|
| |