| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0064 |
|---|
| Symbol | pilB |
|---|
| ID | 3514150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 70862 |
|---|
| End bp | 72637 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637668746 |
|---|
| Product | pilin secretion/fimbrial assembly system protein, PilB |
|---|
| Protein accession | YP_263372 |
|---|
| Protein GI | 71064645 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.978792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAATA GTCTGCGATT TAGGCAAATA TATCGCCTAC CAAATATCGA GCAAGGAGCA
ATCTTAATGT CTATCACAAC CAGTAAATAC GGTGGCTTAG CACAGCAGCT GATTAGCGAA
GGTATCGTAA GCGAAGCGCA TATGAAAGCG GCGCAGACTG ATTCGCAGCA GCAGCAAATA
GGACTGGTCT CTTATCTGGT AGAGCACAAG CTTGCCAATG CCTATCAATT GGCACAAATG
CTGTCGCAAG CGTTTGGCGA CCCTTTATTT GATCTCGATG CGCTCAGCTC AGAGGTTATC
CCAAAAGATT TGGTCGATGA AAAAATCGTG CGTAAGTTTA ATGCCTTACC AATGTTTAAG
CGCGGGCAAC GCTTGTTTGT GGCACTTAGT GATCCGACCC GTATCGATGC GATTGATGCG
ATTGCCTTCA ACTCACGCTT GTCGATTGAA ACAGTCGTGG TTGAAGAAGA CAAGCTTAAA
AGGTGTATTG AAAACCTTTA CGCTGATACC ATGCAAAGTT TTGATAGCTT TTCTGATAGT
GATTTAAATA TTGGCTTTGA TGAGAGTGAA GAAGAGGACA GCGCGACCAA ACTTTCTGAT
AGTGTCGATG AAGCACCGGT CGTCAAGTTT GTTAATAAAA TGCTGGTTGA TGCCATTCGT
ATGGGTGCAT CCGACTTACA TTTTGAGCCC TATGAAAAAA GCTATCGAGT GCGCTTTCGA
GTTGACGGTG TGATGCAAAA GATGGCCAAT CCGCCCGTGC AGCTTGCTGG AAAAATTGCC
GCACGTCTAA AAGTGATGTC ACAAATGGAC ATCTCAGAGC GCCGTGTACC ACAAGATGGG
CGTATGAAGC TTAAGATATC TAAAGATAAG GCCATCGACT TTCGGGTAAG CTGCCTGCCA
ACCTTATTTG GCGAAAAGCT TGTTTTGCGT ATCTTAGACC CTTCATCAGC CATGCTCGGT
ATTGAAGGAT TAGGCTACGA GCCTGACCAA CAAGATATGT TTTTAGAAGC GTTACATAAA
CCGCAAGGGA TGCTTCTTAT CACAGGTCCT ACTGGCTCTG GTAAAACCGT CTCACTTTAT
ACTGGCATCA ATATTCTGAA TACTGGTTCG ACCAATATCT CAACCGCCGA AGACCCTGTC
GAAATTAACC TTGAAGGCAT TAATCAGGTC AACGTCAACC CAAAAGTGGG ATTGACCTTC
TCTACTGCCC TCAAATCATT TTTACGCCAA GACCCTGATA TCGTGATGGT TGGTGAAATT
CGTGACCTTG AAACCGCTGA AATTGCGATT AAAGCAGCAC AAACAGGGCA TATGGTACTT
TCAACCCTAC ATACCAACTC AGCGCCTGAA ACATTGACGC GGTTACTCAA CATGGGTGTA
GCTTCCTTTA ATATTGCTAC TTCCGTCAAC TTGGTCATTG CCCAACGGTT AGCACGGCGC
TTATGTAAAA GCTGTAAAAA ATCCATCAAT ATTCCGCGTC AAAGTTTGCT TGAGCTGGGC
TTTACCGATG CTGACTTGGA CAATACAGAC AATATCATTT ATGAGCCGGT CGGTTGTAAT
AAATGCCGTG AAGGCTATAA AGGGCGTGTC GGTATTTATG AGGTTATGAA AATCACTCCC
GACATTTCAC GTATTATTAT GGAAGATGGT AACGCGATAG ATATCAAAGA TGCGGCACTC
AAAAATGGTT TTAGAGACTT ACGTCGTTCT GGTGTTTTAA AGGTGTTACA AGGCGTGACC
AGTATTCAAG AAATGATGCG CGTGACGTCT GGATAG
|
|---|
| Protein sequence | MVNSLRFRQI YRLPNIEQGA ILMSITTSKY GGLAQQLISE GIVSEAHMKA AQTDSQQQQI
GLVSYLVEHK LANAYQLAQM LSQAFGDPLF DLDALSSEVI PKDLVDEKIV RKFNALPMFK
RGQRLFVALS DPTRIDAIDA IAFNSRLSIE TVVVEEDKLK RCIENLYADT MQSFDSFSDS
DLNIGFDESE EEDSATKLSD SVDEAPVVKF VNKMLVDAIR MGASDLHFEP YEKSYRVRFR
VDGVMQKMAN PPVQLAGKIA ARLKVMSQMD ISERRVPQDG RMKLKISKDK AIDFRVSCLP
TLFGEKLVLR ILDPSSAMLG IEGLGYEPDQ QDMFLEALHK PQGMLLITGP TGSGKTVSLY
TGINILNTGS TNISTAEDPV EINLEGINQV NVNPKVGLTF STALKSFLRQ DPDIVMVGEI
RDLETAEIAI KAAQTGHMVL STLHTNSAPE TLTRLLNMGV ASFNIATSVN LVIAQRLARR
LCKSCKKSIN IPRQSLLELG FTDADLDNTD NIIYEPVGCN KCREGYKGRV GIYEVMKITP
DISRIIMEDG NAIDIKDAAL KNGFRDLRRS GVLKVLQGVT SIQEMMRVTS G
|
|---|
| |