| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1858 |
|---|
| Symbol | |
|---|
| ID | 5205870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 2312150 |
|---|
| End bp | 2312986 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640600089 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_001280748 |
|---|
| Protein GI | 148653655 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000000949227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00201056 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA TTATCACCAA TAAGTTTTCT AACTATCCTG TTATTACCTC AGACAAAAAC
CCAACAGCCA AGCTGGCTAA AGCTCTATTA AATCAATCCA GACAACGTAA AAAGTCGGGT
CAAACTGTAT TAGAGGGGGT TCATCTTATC GAAGCTGCCC TACAGGCCGA CTTCCTGCCA
GAACAAATTA TCATCTCTTA TAGCGGTCTA TCACATCCAG AAGTACAAAC ACTATTAAGC
TCATTGAGTA ATTATAACCT CGATAACAAG GTAACTGTGG TTAGCGATAG TGTCTATCAA
GGTATAACCA CCTTAGGCAG TGGTGTTGAG ATTATGGCCA TTGTGAAAGT ACCACAACAT
GATCTACAAG CTCTAAAATC TCCGATTACG ACAGATTGCT TGATATTAAA TGACGTACAA
GACAATGGCA ATGTGGGCAC CTTACTGCGG ACTGCAGCAG CCGTCGGTAT CAAAACCATA
ATCTGTACTA AAGGTAGCGC CCAAGCTTGG TCACCAAAGA CGATGCGTGC CGGTATGGGC
GCGCAGTTTG GCCTGACCAT TTATGAAGGT ATTGAGGCGG ATGAAGTATT GGCTTATTTG
CGCCTTCCAG TATTTGCTAC CAGCTCACAT ACTGATAACA TCATTTATAA GCAGAATCTA
AATCGTCCTG TAGCTTGGGT GATGGGTCAT GAAGGACAAG GTGTCTGTGA CGATATCATG
AAGCTTGCCA CACCAGTAGC GCTGCCTCAA CCAAATGGTC AAGAAAGCTT AAATGTGGCC
ATTGCAGGCG CTCTATGTAT GTATGAGACC TTGCGCCAAA GACACTATGT CGACTAG
|
|---|
| Protein sequence | MTDIITNKFS NYPVITSDKN PTAKLAKALL NQSRQRKKSG QTVLEGVHLI EAALQADFLP
EQIIISYSGL SHPEVQTLLS SLSNYNLDNK VTVVSDSVYQ GITTLGSGVE IMAIVKVPQH
DLQALKSPIT TDCLILNDVQ DNGNVGTLLR TAAAVGIKTI ICTKGSAQAW SPKTMRAGMG
AQFGLTIYEG IEADEVLAYL RLPVFATSSH TDNIIYKQNL NRPVAWVMGH EGQGVCDDIM
KLATPVALPQ PNGQESLNVA IAGALCMYET LRQRHYVD
|
|---|
| |