Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1792 |
Symbol | |
ID | 5205059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 2222358 |
End bp | 2223719 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640600017 |
Product | sodium:neurotransmitter symporter |
Protein accession | YP_001280682 |
Protein GI | 148653589 |
COG category | [R] General function prediction only |
COG ID | [COG0733] Na+-dependent transporters of the SNF family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000197904 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAACA AACAAAATCA TGCCCAGTGG AGCTCGAAAG TGGGCTTTAT TATGGCTGCC GTTGGTTCGG CGGTTGGCTT GGGAAATATT TGGAAATTCC CGTATATGGT AGGCGAAAGT GGGGGTTCTG CTTTCGTATT GGCATATTTG TTGTGTATCG CGCTGATAGG TTTCCCTATC TTAGTGGCTG AATGGATGAT CGGTCGCCGC GGACAAAAAA ACCCGATGGA CTCTTTTTCT GATGTGGCCG CAAGTGAAGG CAAAAGCAGA AACTGGGCCA TCGTTGGTGT GGTGGGTATT TTAGGTGCCT TTTTAATTCT ATCGTTTTAT AGTGTGATCG GTGGCTGGGC CTTGAACTAT ATGGTTAAGC TAGGTTCTGG CACTTTTACT GGCTTAAATG GTGAAGCGGT AGAGGGCGTG TTTAACGGTA TGTTGGCCTC TCCTGGCACC TTGACCATTT GGCACACAAT ATTTATGGGT GTCACTGCAA TCATTGTGGC GCTTGGCGTG ACCAGTGGTA TCGAAAAAGC TTCAAAAATT ATGATTCCTA TGTTGGCGCT TTTGCTATTC GTCATCGTAG GCTACAACAT TATGAATGGT GGTTTTGCAG AAGCGGTGAC TTATTTATTC TCACCTGACT TATCTAAGTT GACCGGTCCT GACTCATCAA CCATTATCTT ATCAGCGTTA GGTCATGCCT TTTTTACCTT ATCTTTGGGT ATGGGTATCA TGGTCACTTA TGGCTCTTAC TTGGGTAAAA ACATCAGCTT ATTGAGCATG GCGCGTACTG TAGTTATCTT GGATACCGTG ATTGCTCTTG TAGCAGGTTT GGCGATTTTC CCAATTATCT TTAGTCATGG TATGGATCCT GCTGCAGGCC CTGGCCTTAT CTTTGTAAGC TTACCGATTG CCTTTGGTAG TATGACAGCA GGCGCACTTT TGGGTACCTT GTTCTTCTTA TTGGTGACCT TTGCAGCGCT GACCTCTTCT ATTTCATTGA TTGAGCCCTC TATTGAGTTC TTAGAAGAGC GTACGTCAAT GAGCCGTACG ACCTCAGTTA TCGTGGCCAC TATCGCCATT TGGTTATTGG GTGTGGCGGC ATTATTGTCT TTCAACTTAT GGTCAGATGT ACTTATCTTC GGCAACAATA TCTTTGATTT ATTAGATAAG TTGACCAGTA AATTTATGTT GCCACTGGCC GGCTTGGCCG CGATTGTATT TGCCGGCTGG GTCATGAGCC AAGACAGCGT ACGTCAAGAG CTGGGGCTTT CAGGCGGTGC TTGGACCTTG TGGCAAATAG TGGCTAAGTT TATTGCGCCA ATTGGGGTAA TTATTGTCTT TATTAATACT TTGATAAGCT AA
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Protein sequence | MSNKQNHAQW SSKVGFIMAA VGSAVGLGNI WKFPYMVGES GGSAFVLAYL LCIALIGFPI LVAEWMIGRR GQKNPMDSFS DVAASEGKSR NWAIVGVVGI LGAFLILSFY SVIGGWALNY MVKLGSGTFT GLNGEAVEGV FNGMLASPGT LTIWHTIFMG VTAIIVALGV TSGIEKASKI MIPMLALLLF VIVGYNIMNG GFAEAVTYLF SPDLSKLTGP DSSTIILSAL GHAFFTLSLG MGIMVTYGSY LGKNISLLSM ARTVVILDTV IALVAGLAIF PIIFSHGMDP AAGPGLIFVS LPIAFGSMTA GALLGTLFFL LVTFAALTSS ISLIEPSIEF LEERTSMSRT TSVIVATIAI WLLGVAALLS FNLWSDVLIF GNNIFDLLDK LTSKFMLPLA GLAAIVFAGW VMSQDSVRQE LGLSGGAWTL WQIVAKFIAP IGVIIVFINT LIS
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