Gene PsycPRwf_1599 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_1599 
SymbolhemE 
ID5206885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp1968809 
End bp1969915 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content46% 
IMG OID640599821 
Producturoporphyrinogen decarboxylase 
Protein accessionYP_001280490 
Protein GI148653397 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01464] uroporphyrinogen decarboxylase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00586302 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000224711 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTATAA TGAATTCTGA TTCTGTTGAA AATACTCACA ATTTTGCTCC TTTAAAAAAC 
GATCGCTTAT TAAAAGCTTT ACGCTTTGAG CCCATCGATA CCACGCCAGT ATGGATGATG
CGCCAAGCGG GTCGTTATTT ACCTGAGTAT AAAGCCACGC GAGCGGAAGC CGGCGACTTC
ATGAGCTTGT GCAAAGACAC AGCGCGTGCC ACAGAAGTCA CCATGCAGCC TTTAAGACGT
TATGAGTTAG ATGCCGCCAT TTTGTTCAGC GATATCTTGA CCATTCCTGA TGCTATGGGT
CTAGGGTTAT ATTTTGAAAC AGGTGAGGGA CCGAAGTTTA AGCGCACGTT ACGCACAGAG
GCCGACTTTA ATCAGTTAGA AGCCTTTAAT GCAGCAGACT CACTAAGCTA TGTTATGGAT
GCGGTAACCA GTATTCGTAA AGAGCTTAAT GGCAAAGTGC CTTTGTTTGG TTTTTCAGGC
AGTGCTTGGA CCTTGGCCAC TTACATGATT GAAGGCGGCA GCTCTAAAGA TTATCGCTAT
ACCAAAGGCT TGCTGTACAG CAAACCTGAA TTTTTGCATC AAATTCTAGA CCATATCACC
ACAGCGATTA TCGATTATTT AGACGCCCAA ATTGTGGCTG GTGCCCAAAT TGTTCAGCTA
TTCGATAGCT GGGGCGGTGC GCTTGCACAC CGTCAATTTG CTGAGTTCTC ACATAAGTAT
AATAAGCGTG TGGTGGCCGA GCTAAAACAG CGTCATCCTG AAGTGCCTGT GGTGGTCTTC
ACCAAGGGCG GCGGCTTATG GCTTGATGTT CAGATGGACA GCGAAGCGGA CTGCTTGGGC
TTAGATTGGA GTATGCCACT AGATAAAGCC CGTGCTATTT TAGCTACTGG CAAACGCAAG
ATTGCTGTCC AAGGTAACCT AGATCCGGCC ACTTTATACG GTTCACCTGA GTTAATCAGA
CAGTCAGTCA ATGCCATGCT AGATGATGCC TATGCCGGTG GTGAGAAGAC AGGCTATATT
GCGAACTTAG GCCATGGCAT TACTCAGTGG GTAGACCCAA AAAATGCAGG GGTCTTTGTG
GATGCCGTGC ATGAGTACAA GCTGTAA
 
Protein sequence
MSIMNSDSVE NTHNFAPLKN DRLLKALRFE PIDTTPVWMM RQAGRYLPEY KATRAEAGDF 
MSLCKDTARA TEVTMQPLRR YELDAAILFS DILTIPDAMG LGLYFETGEG PKFKRTLRTE
ADFNQLEAFN AADSLSYVMD AVTSIRKELN GKVPLFGFSG SAWTLATYMI EGGSSKDYRY
TKGLLYSKPE FLHQILDHIT TAIIDYLDAQ IVAGAQIVQL FDSWGGALAH RQFAEFSHKY
NKRVVAELKQ RHPEVPVVVF TKGGGLWLDV QMDSEADCLG LDWSMPLDKA RAILATGKRK
IAVQGNLDPA TLYGSPELIR QSVNAMLDDA YAGGEKTGYI ANLGHGITQW VDPKNAGVFV
DAVHEYKL