Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1599 |
Symbol | hemE |
ID | 5206885 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 1968809 |
End bp | 1969915 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640599821 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_001280490 |
Protein GI | 148653397 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00586302 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000224711 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCTATAA TGAATTCTGA TTCTGTTGAA AATACTCACA ATTTTGCTCC TTTAAAAAAC GATCGCTTAT TAAAAGCTTT ACGCTTTGAG CCCATCGATA CCACGCCAGT ATGGATGATG CGCCAAGCGG GTCGTTATTT ACCTGAGTAT AAAGCCACGC GAGCGGAAGC CGGCGACTTC ATGAGCTTGT GCAAAGACAC AGCGCGTGCC ACAGAAGTCA CCATGCAGCC TTTAAGACGT TATGAGTTAG ATGCCGCCAT TTTGTTCAGC GATATCTTGA CCATTCCTGA TGCTATGGGT CTAGGGTTAT ATTTTGAAAC AGGTGAGGGA CCGAAGTTTA AGCGCACGTT ACGCACAGAG GCCGACTTTA ATCAGTTAGA AGCCTTTAAT GCAGCAGACT CACTAAGCTA TGTTATGGAT GCGGTAACCA GTATTCGTAA AGAGCTTAAT GGCAAAGTGC CTTTGTTTGG TTTTTCAGGC AGTGCTTGGA CCTTGGCCAC TTACATGATT GAAGGCGGCA GCTCTAAAGA TTATCGCTAT ACCAAAGGCT TGCTGTACAG CAAACCTGAA TTTTTGCATC AAATTCTAGA CCATATCACC ACAGCGATTA TCGATTATTT AGACGCCCAA ATTGTGGCTG GTGCCCAAAT TGTTCAGCTA TTCGATAGCT GGGGCGGTGC GCTTGCACAC CGTCAATTTG CTGAGTTCTC ACATAAGTAT AATAAGCGTG TGGTGGCCGA GCTAAAACAG CGTCATCCTG AAGTGCCTGT GGTGGTCTTC ACCAAGGGCG GCGGCTTATG GCTTGATGTT CAGATGGACA GCGAAGCGGA CTGCTTGGGC TTAGATTGGA GTATGCCACT AGATAAAGCC CGTGCTATTT TAGCTACTGG CAAACGCAAG ATTGCTGTCC AAGGTAACCT AGATCCGGCC ACTTTATACG GTTCACCTGA GTTAATCAGA CAGTCAGTCA ATGCCATGCT AGATGATGCC TATGCCGGTG GTGAGAAGAC AGGCTATATT GCGAACTTAG GCCATGGCAT TACTCAGTGG GTAGACCCAA AAAATGCAGG GGTCTTTGTG GATGCCGTGC ATGAGTACAA GCTGTAA
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Protein sequence | MSIMNSDSVE NTHNFAPLKN DRLLKALRFE PIDTTPVWMM RQAGRYLPEY KATRAEAGDF MSLCKDTARA TEVTMQPLRR YELDAAILFS DILTIPDAMG LGLYFETGEG PKFKRTLRTE ADFNQLEAFN AADSLSYVMD AVTSIRKELN GKVPLFGFSG SAWTLATYMI EGGSSKDYRY TKGLLYSKPE FLHQILDHIT TAIIDYLDAQ IVAGAQIVQL FDSWGGALAH RQFAEFSHKY NKRVVAELKQ RHPEVPVVVF TKGGGLWLDV QMDSEADCLG LDWSMPLDKA RAILATGKRK IAVQGNLDPA TLYGSPELIR QSVNAMLDDA YAGGEKTGYI ANLGHGITQW VDPKNAGVFV DAVHEYKL
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