Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1564 |
Symbol | |
ID | 5206769 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 1917978 |
End bp | 1921193 |
Gene Length | 3216 bp |
Protein Length | 1071 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640599786 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001280455 |
Protein GI | 148653362 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000721596 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATTTCC CCAATCCGTT TTATCCGCAA AACCCCATCT CTTTTTCGCC AGAACAGGTG CTGGACCCCG CTTTTATTAA TAGGCCACCA AGCGAGCTAT TTAAGCTAAT CTCGCCCTTA TATAGTGCCG ATGAGGACCA ATGGCTTGGG GCTTTATTAC CCCTAGCTGA GCCTAGGCTT AAAGAAGGCG TTGACGAGCG TTTGGCCATT AGCGATCAGA CCAAAAGCTT AGTGGAGCAT GTGCGTAGCA ATGACAAAGC GGTCAAAATG GTGGACTCGC TGTTATTAGA GTACAGCTTA GATACCCAAG AGGGTATTTT GCTCATGAGC TTGGCCGAAG CTTTGATTCG AGTGCCAGAC AATGCCACAG CCGATGCGCT TATCCGTGAC AAAATGAGCG TTGCCGATTG GAAAAAACAC TTAAAAGATG ACAATGGCTT TATCGTTAAT GCCTCAACTT GGGGGCTGAT GATGACTGGC CGTGTGGTCA GCGTGGATTC TTCAACCACG GCAGCAGGCT TCTTAGATCG TATGACCAAG AAGATGGGTG AGCCTGTGAT TCGTAGCGCC ATGCAGCGTG CGATGAAGAT TATGGGCCAT CAGTTTGTGC TGGGTGAGAC CATTGAGGAT GCCAATCGCA ACAGTCAGCC TTATCGTAAT AAAGGATATA CTTACTCCTT TGATATGCTT GGTGAGGCGG CGGTTACTCA TAAAGATGCC GAAAAGTACT TCAGTGATTA TCTGCATGCC ATTCGCTCAG CGGCGCATGT TCAAGTCAAA GAGGGTATGC CTAAGCCTTC GGTTTCTATT AAGTTATCTG CGCTGCATCC ACGTTATGAA GCGACCCAAA TTGATCAGGT GCTAGGCTTG CTGCGTCAGC GTTGTATCTT ACTGATTGAA GCGGCGCGTG AGGTGGATGT CGATATCAGT ATTGATGCAG AAGAGGCCGA CCGCTTAGAG GTGTCGTTAA AATTATTTGA GTCTTTATAC CGAGACAACA TGACTCAAGA CTGGGATGGT TTGGGGCTGG TGGTACAAGG CTACTCGAAA CGTGCTTTGG CGGTGCTGGC GTGGCTGGCA AGCTTATCAA AAGAGGTGGG CGACCGTATC CCTGTACGCT TGGTAAAAGG CGCATATTGG GATTATGAAA TTAAACTGGC TCAGCAAAAA GGCATTACCG GCTATCCGGT CTGGACCCGC AAAGAGGGTA CCGACGTGGC ATATCTGGCG TGTGCCCGCT TCTTATTAAC AGAGCAAATT CGTGGTGTGT TGTGGCCACA GTTCGCCACA CATAATGCCC ACACTTTATC GTCTGTGATG ACCATGAGTG ATCATAGAGA CTTTGAGTTT CAGCGTCTAC ACGGTATGGG CGATGCGCTG TATGATCATA TTTTGCAAGC GTACAATATT CCGGTCCGTA TCTATGCGCC TGTGGGTGCC CACAAAGATT TGCTGCCGTA TTTGGTGCGC CGCTTATTAG AAAACGGTGC CAACAGCTCA TTTGTGCATC AGCTACTCGA TAAGAGTCAT CCTGTTGAGA AGCTGACCGT ACATCCTTAC GATAAATTGA CGGCACATGA AACCCTGCAT AACCCTCGTA TTCCGATGCC GCTTGATATC TATGGTGGCC GCTTGGCAAG CTTTGGGCCT AATATCTTCG TTGAATCGCA GTGGCAACCC TTTAAAGCGG CCGTTGATGC GCACCTAGCG CAGACTTGGC AGGCCAATCC GATTATCAGT GGTCAACAAA TCACTCAAGA CAGCCATCAA CATTTAACGC TTAATAACGT GGTGGCGCCT TGGAACCATC AAGTGGCTGT TGGTGAGGTG GTGTTTGCTG ATGCTGAGTT GGCTGCACAG GCGATTGAAG CGGCGCATCA AGGCCAAGAT AGGTGGCAGC AAGTCTCTGC CAGCGAGCGT GCGGCCATAT TGAAGCGTAC CGCTGACTTG TATGAAGACA ACTATGCTCA GCTTGTGGCC ATGTGTCACA AAGAGGCTGG CAAGACCTTA CAAGACAGCA TTGATGAGGT GCGAGAGGCG GTTGATTTTT GTCGTTATTA TGCCGAAGAA GCTGAGCGTT TAGAGCAACA GACTCACAGC TTTACTGATA TCAATGGTAA GCAAGTCACC CAAAAAAGAG CGCCTCGCGG CACCATGGTA TGTATCAGTC CTTGGAACTT CCCACTGGCC ATTTATACCG GTCAGATCAT GGGCGCCTTG GCAGCTGGCA ACACTGTGGT GGCCAAACCA GCTGAGCAAA CCAGCTTAAT TGCTTACTTT GCGGCGCAAT TGATGTATCA AGCCGGCGTA CCTGAGTATG CGCTACAATT GGTGACCGGT GCCGGTGAAG TGGGCGGTGC CTTGACCTCA TCAGCGCACA TTGATGGGGT GGTATTTACC GGATCAACTC AGACCGCACA GCTGATTAAC CGTGCGCTAC ACTCTGAGGA GCGCTTGCAG CAAGTGGCTG AGCTGTTTGG TGATAAAAAA CCACTGCCTA TTTTGATTGC AGAAACTGGT GGTCAAAATG CCATGATTGT CGACTCGACA GCCTTGCCTG AACAGGTGGT AAAAGATGCA GTAATGTCAG CCTTTGGTTC TGCCGGCCAG CGCTGCTCGG CATGCCGTAT CTTGTGCTTG CAAGAAGATG TGGCCGATAG TGTCATTGAG CTGCTAAAAG GCAATATGGC TCAGCTTATC GTGGGTAACC CAACCCAAGT ATCGACTGAT GTGGGCCCAG TTATCGACCA AGACGCTCAA AAAGGTCTGC GTGCCCATAT AGAGCAAATG CGTAAAGATG ACCGAGCACG CATTATTGCC CAGACACCGA TCAGTGCAGA CGCCGCTCAT AACCTCAGTA ACAGCACCTT TGTATTGCCG ACAGCCGTTG AAGTGGCCAG CATTGATGTG ATTGGTGGTG AGCACTTCGG TCCTATTTTG CATGTGCTAC GTTACAAAGC GGGCAAGTTA GATGAGCTGA TTGATGAAAT TAATGCCACC GGTTATGGCT TAACCTTGGG TATTCACAGC CGTATTGAAA CTGTGGCCAA TCACATTGAG CGCCGTACCA AAGTGGGTAA CACCTACATT AACCGCAACC AGATTGGTGC GGTGGTAGAT GAGCAGCCGT TTGGTGGTAG TGGCTTGTCG GGTACCGGTC CCAAAGCCGG TGGCCCTCGC TATGTGGCCA GATTGACCCA GTGGCAGACG CTATAA
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Protein sequence | MNFPNPFYPQ NPISFSPEQV LDPAFINRPP SELFKLISPL YSADEDQWLG ALLPLAEPRL KEGVDERLAI SDQTKSLVEH VRSNDKAVKM VDSLLLEYSL DTQEGILLMS LAEALIRVPD NATADALIRD KMSVADWKKH LKDDNGFIVN ASTWGLMMTG RVVSVDSSTT AAGFLDRMTK KMGEPVIRSA MQRAMKIMGH QFVLGETIED ANRNSQPYRN KGYTYSFDML GEAAVTHKDA EKYFSDYLHA IRSAAHVQVK EGMPKPSVSI KLSALHPRYE ATQIDQVLGL LRQRCILLIE AAREVDVDIS IDAEEADRLE VSLKLFESLY RDNMTQDWDG LGLVVQGYSK RALAVLAWLA SLSKEVGDRI PVRLVKGAYW DYEIKLAQQK GITGYPVWTR KEGTDVAYLA CARFLLTEQI RGVLWPQFAT HNAHTLSSVM TMSDHRDFEF QRLHGMGDAL YDHILQAYNI PVRIYAPVGA HKDLLPYLVR RLLENGANSS FVHQLLDKSH PVEKLTVHPY DKLTAHETLH NPRIPMPLDI YGGRLASFGP NIFVESQWQP FKAAVDAHLA QTWQANPIIS GQQITQDSHQ HLTLNNVVAP WNHQVAVGEV VFADAELAAQ AIEAAHQGQD RWQQVSASER AAILKRTADL YEDNYAQLVA MCHKEAGKTL QDSIDEVREA VDFCRYYAEE AERLEQQTHS FTDINGKQVT QKRAPRGTMV CISPWNFPLA IYTGQIMGAL AAGNTVVAKP AEQTSLIAYF AAQLMYQAGV PEYALQLVTG AGEVGGALTS SAHIDGVVFT GSTQTAQLIN RALHSEERLQ QVAELFGDKK PLPILIAETG GQNAMIVDST ALPEQVVKDA VMSAFGSAGQ RCSACRILCL QEDVADSVIE LLKGNMAQLI VGNPTQVSTD VGPVIDQDAQ KGLRAHIEQM RKDDRARIIA QTPISADAAH NLSNSTFVLP TAVEVASIDV IGGEHFGPIL HVLRYKAGKL DELIDEINAT GYGLTLGIHS RIETVANHIE RRTKVGNTYI NRNQIGAVVD EQPFGGSGLS GTGPKAGGPR YVARLTQWQT L
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