| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1395 |
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| Symbol | |
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| ID | 5206692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 1711848 |
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| End bp | 1713680 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640599613 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001280290 |
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| Protein GI | 148653197 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.507365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000128889 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGACTA ATCCATCGGC TAATCAGGCG TCGTCAACTT CTTCTGGCCA GAGTCACCCG
CCAAAGCCTG TCTCTGGCAA CCCAGAAACA AAAACCCGTA CTCAAACTTA TTTGCGTTTA
ATGCAATATA TCAAGCCTTA TTGGTGGGCG ATTGCCTTAA CCATAGTAGG CTTTGCAATC
AACTCCGCCA CTGAGGTGGG TATTGCTAAG TTAATTCAGT ACATCACAGA TGCCATTAAC
CACGGCAATC AGTCGCAGCG CAACTTGTTT CCCTTTTTGA TTGTGTTGCT ATTTTTTGTG
CGGGGATTAG GCTCTTTTTT GGGCAACTAT TTCTCAGCTT TAATCTCACG AAACCTCGTC
TATAAACTGC GTGTTGAAGT GTTCGATAAG CTGCTGCGGC TACCAAACGC CTTCTTTTTA
GCCAATCCCT CAGGCACCAT CTCCTCCAAG CTTATCTTTG ATGTCGAGCA GGTGACATCT
GCCAGTACCG ACTCGTTAAA GACCATGTTG CGTGATGGCT TAACGGTGGT CTCTTTATTG
GGTTATTTGT TGTACTCCAA CTGGCGATTA AGCTTAATCT TATTTGTGGT GCTACCACCG
ATTTTGTTAT TGGTACAAAA GGCGTCTAAG CGCTATCTTA AGCTGTCAAA AGGTATTCAG
CAGACCATGG GGGATGTCAG CCACATTACC AATGAGGTTA TCACAGGCTA TCAGGTGGTC
AAAAACTATG GCGGTCAAAG CTATGAGCAA GGCCGCTTTG AAAGAGCCTC GCTAAAAAAC
CTAAAGCAGG GCATGAAAAT TGTGGTGACC AATAGCATTA ATACCCCTGC AGTACAGCTG
TTAATGGCTT CTGCTTTGGC CGTTGTGATT TGGCTGGCGC TGCGTCCTGA TGTCATCTCC
AATACCACGG CAGGTGAGTT TATTGCCTAT TTGACCGCCG CCGGTCTACT TAGTAAGCCA
GTACGTAATC TGACGGATGT CAATGAAAAA CTACAGCGTG GTATTGCCGC TGGTGAATCT
ATCTTTGCGC TTTTAGATGA GCCTGAAGAG CAGGATACAG GAGAGCATTT AGATAAGACC
AAAGGCGAGA TTCGCTTTGA GCATGTCTCT ATGCAGTATC CTGATGGTAC CCAGGCTTTA
CGAGACTTTA ATCTGACAGT TAACGCTGGT GAGACAGTCG CCTTCGTCGG CAAAAGTGGC
GCCGGTAAAA CCACCTTGGT CAACTTATTA ACACGTACTT TAGACCCCAC TGAAGGCACC
ATCTATTTAG ACGGTCTACC TCTAAATCAG ATTTCACTAA CGGCGCTACG GGCTCAGGTG
GGTATGGTCA ATCAACAAGT GGTCCTATTT AATGATACAG TGCGCCATAA CATTGCTTAT
GGCGACTTAT CTACCAAGAC TGATGAGCAA GTGGTGACGG CAGCCAAAGC TGCTTTTGCG
CATGACTTTA TCATGGCATT GCCGCAAGGC TATGACAGTA ATATTGGTGC CGAAGGCCTC
CAGTTATCTG GCGGTCAGCG TCAGCGTTTA TCGATTGCAC GCGCCTTACT AAAAGATGCA
CCGGTACTGA TATTAGATGA GGCCACCAGT GCTTTGGACA ATGAGTCTGA GTACTATATT
CAGCAGGCAT TGGATAACGT GATGCAAGAC AGAACCACCT TGGTTATTGC GCACCGTTTA
ACTACCATTG AGTCCGCTGA CAAAATTGTA GTGATGGAAG GTGGGCGCAT TATTGAATCA
GGCACACATG AGTCTTTGAT GGCCTTGTCG GGGCACTATG CGCACATGTA TGATAGAGAT
TTTGCAGAGA GTGAGTTTAA TAAAAACCAC TGA
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| Protein sequence | MMTNPSANQA SSTSSGQSHP PKPVSGNPET KTRTQTYLRL MQYIKPYWWA IALTIVGFAI
NSATEVGIAK LIQYITDAIN HGNQSQRNLF PFLIVLLFFV RGLGSFLGNY FSALISRNLV
YKLRVEVFDK LLRLPNAFFL ANPSGTISSK LIFDVEQVTS ASTDSLKTML RDGLTVVSLL
GYLLYSNWRL SLILFVVLPP ILLLVQKASK RYLKLSKGIQ QTMGDVSHIT NEVITGYQVV
KNYGGQSYEQ GRFERASLKN LKQGMKIVVT NSINTPAVQL LMASALAVVI WLALRPDVIS
NTTAGEFIAY LTAAGLLSKP VRNLTDVNEK LQRGIAAGES IFALLDEPEE QDTGEHLDKT
KGEIRFEHVS MQYPDGTQAL RDFNLTVNAG ETVAFVGKSG AGKTTLVNLL TRTLDPTEGT
IYLDGLPLNQ ISLTALRAQV GMVNQQVVLF NDTVRHNIAY GDLSTKTDEQ VVTAAKAAFA
HDFIMALPQG YDSNIGAEGL QLSGGQRQRL SIARALLKDA PVLILDEATS ALDNESEYYI
QQALDNVMQD RTTLVIAHRL TTIESADKIV VMEGGRIIES GTHESLMALS GHYAHMYDRD
FAESEFNKNH
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