Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1382 |
Symbol | |
ID | 5204725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 1695390 |
End bp | 1697294 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640599600 |
Product | dihydroxy-acid dehydratase |
Protein accession | YP_001280277 |
Protein GI | 148653184 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism |
COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.469767 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000362711 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAATACC GCTCTAAGAC CTCAACTTCA GGCCGCAATA TGGCTGGTGC CCGTGCATTA TGGCGTGCCA CAGGTATGAC TGATGGTGAC TTTGATAAGC CAATTATCGC CATTGCCAAC TCCTTCACCC AGTTTGTTCC AGGTCACGTC CATCTAAAAG ACATGGGCCA ACTGGTTGCC CGTGAGATTG AGCGTGTGGG CGGGGTTGCC AAAGAATTTA ACACCATCGC GGTCGATGAT GGCATTGCCA TGGGTCACAG CGGTATGCTG TACTCCTTGC CAAGCCGTGA CTTAATCGCA GATTCTGTAG AGTATATGGT CAATGCCCAC TGCGCAGATG CGTTAGTATG TATCTCAAAC TGCGACAAAA TCACCCCAGG TATGTTAATG GCAGCCATGC GCCTAAACAT CCCAGTTATC TTTGTCTCAG GTGGCCCTAT GGAGGCCGGC AAGGTATTGG CTGAAGATTT AGCGCCCAGT CATAATCTTG ATGCCCCCGT CAATGAAGAT GGCAAAAAAA TCCGTAAGCT AGATCTTGTG GATGCCATGA TTGACGCCGC TGATGACAAC GTAAGCGATG CTGACGTGTT AGAGATTGAG CGCTCCGCTT GCCCAACGTG CGGCTCATGC TCAGGCATGT TCACCGCCAA CTCAATGAAC TGCTTAACCG AAGCCTTAGG TCTATCTTTG CCCGGTAACG GTTCATTGCT AGCCACTCAT GCCAAGCGTG AAGCCCTGTT CTTAGAAGCC GGTCGCCGTA TTGTTGATTT AGCAAAACGC CGCTATGAGC AGGACGATGA GTCAACCCTG CCCCGCTCTA TTGCCACCAA AGAAGCCTTT GAAAACGCCA TGAGCCTTGA TATCGCCATG GGCGGCTCAA CCAATACCAT CTTGCATTTA TTGGCCGCTG CGCATGAAGC GGAAGTTGAC TTTAAAATGG CCGATATCGA CCAGTTAAGT CGCCGCGTGC CTTGCTTATC AAAAGTGGCG CCTGCTACCC AAAAATACCA TATGGAAGAT GTGCACCGTG CCGGCGGGGT ATTGGCAATT TTGGCCGAGC TAAATCGTGC CGGTCTATTG CACACAAACT TGCCAACCGT TCACGCCAAG ACCTTGCAAG AAGCGCTTGA GATGTGGGAT GTGATGAATA CTGATCATCC CAATCATGAA GCGGCACGTG ATTTGTATAT CGCAGCACCA GGCGGCGTAC GTACCACCCA AGCTTTCTCA CAAAATAAAG CCTGGTCCAA TCTGGATCTA AACCGTGAGT CTGGCTGTAT CCGCTCTGCC GAGCATGCTT ATTCTAAAGA CGGCGGTCTG GCCGTATTGT TCGGTAACAT TGCTGAGCGT GGCTGCGTGG TAAAAACTGC TGGCGTTGAT GACAGCATCC TAACCTTCAC TGGCCGTGCC CGTGTGTTTG AGTCACAAGA TGATGCCGTA GAGGCCATCT TGGCGGACAA AGTCGTGGCC GGTGATATTG TCATTATCCG TTATGAAGGC CCGAAAGGTG GCCCGGGCAT GCAAGAGATG CTCTACCCGA CTTCTTACTT AAAATCAAAA GGCTTGGGTA AAGAGTGTGC GCTATTAACC GATGGCCGCT TTTCTGGGGG CACCTCGGGT CTATCAATCG GCCATGCCAG CCCGGAAGCT GCCGAAGGTG GCGCTATTGG TCTAGTAAAT GAGGGTGATA CCATCCACAT CGACATTCCA AATCGCAGCA TTAACCTGGA GGTCTCTGAC AGTGAGCTTG CCCGCCGCCG TGAAGAGATG GAAGCACGTG GTAGCAAAGC TTGGAAACCT GAAAGTCGCG AGCGCCATGT CAGTCAAGCC CTACGTGCCT ACGCCGCCAT GACCACCAGC GCGGATACCG GTGCGGTACG TGACGTGAGT CAAGTTGAAC GTTAA
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Protein sequence | MQYRSKTSTS GRNMAGARAL WRATGMTDGD FDKPIIAIAN SFTQFVPGHV HLKDMGQLVA REIERVGGVA KEFNTIAVDD GIAMGHSGML YSLPSRDLIA DSVEYMVNAH CADALVCISN CDKITPGMLM AAMRLNIPVI FVSGGPMEAG KVLAEDLAPS HNLDAPVNED GKKIRKLDLV DAMIDAADDN VSDADVLEIE RSACPTCGSC SGMFTANSMN CLTEALGLSL PGNGSLLATH AKREALFLEA GRRIVDLAKR RYEQDDESTL PRSIATKEAF ENAMSLDIAM GGSTNTILHL LAAAHEAEVD FKMADIDQLS RRVPCLSKVA PATQKYHMED VHRAGGVLAI LAELNRAGLL HTNLPTVHAK TLQEALEMWD VMNTDHPNHE AARDLYIAAP GGVRTTQAFS QNKAWSNLDL NRESGCIRSA EHAYSKDGGL AVLFGNIAER GCVVKTAGVD DSILTFTGRA RVFESQDDAV EAILADKVVA GDIVIIRYEG PKGGPGMQEM LYPTSYLKSK GLGKECALLT DGRFSGGTSG LSIGHASPEA AEGGAIGLVN EGDTIHIDIP NRSINLEVSD SELARRREEM EARGSKAWKP ESRERHVSQA LRAYAAMTTS ADTGAVRDVS QVER
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