Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1232 |
Symbol | |
ID | 5205875 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 1514141 |
End bp | 1517752 |
Gene Length | 3612 bp |
Protein Length | 1203 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640599452 |
Product | DNA polymerase III, alpha subunit |
Protein accession | YP_001280130 |
Protein GI | 148653037 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.650603 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTTTG TACATCTTGG TATTCACAGC GAATTTTCTA TTACGGACTC TATTATCCGT ATCAAACCTA TGGTCAAAGC GGCCGCTGCT GATGGACAGA TGGCACTGGC ATTGACAGAT TTATCGAATT TGTATGCCAC TGTTAAATTC TATCGTGCCT GCCTAGATGC GGCGATAAAG CCCATTATTG GTGCTGAGAT TATTCTTGAT GATGAACATA CTCGTTTAAC CTTGCTTGCC ATGAATAACG AGGGTTATCA AAGCATTACC CGTATTGTCT CGCTAGGCTT CACTGATGGC CGCATGAATC CTGATAACCG AGGAACACCT ATTGTCAATA AAGCGCATTT GCTAGATAAC AGCGCTGGGG TTATTGTACT ATTCACCGAA AAATCTGATG TGGGCCAAGC TTTATTAGGC GCAAACCCAG AGCGCGGACA TCAATTAATT AGCGAGTATC AAGCAGTATT CGGTGATCGC CTGTATTTTG CGATAAAGCG CACCAAACGG GCTTTGGAAG ATACTTTTAT TGAACAGGCC ATATTGGCAG GTCAGCGTCA TGGTATTGCC ACAGTGGCCC ATAATGACGT GCGCTTTTTG GAAGAAGAGG ACTTTGATGC TCACGAAGCT CGAGTGTGTA TTGCCTCCTC CCATGTATTG GCTGATCCCA ATAGGCCACA CGACTACTCA AGTGAACAGT ATCTAAAGAC TCAAGCCCAG ATGACTGAGC TATTTTCCGA TATCCCTCAG GTGGTTCAAA ACACGGTCAT TCTAGCGCAG CGCTGTAACG TTACTTTGAC ACTGGGCATA AACGTATTGC CTGAATTTCC AGTACCAGAA GGTGAGACCA TTGAGTCTTT CTTCAGAGCT GAGTCGCAGC GCGGGCTGGA GGCACGTTTG GATAAGTTAT ATCCAGTAAG CGAGCGTGAT GAGACGTGGC CTGAGATTCG CAGACCCTAT GATGAGCGCT TGGAGCATGA GCTTAATATT ATCTTGGAGA TGGGATTTCC GGGCTACTTC TTAATCGTTA TGGACTTTAT TCGCTGGGCC AAGGCCAATG GCGTGCCTGT CGGTCCAGGG CGTGGTTCGG GCGCCGGCTC GTTAGTGGCC TACGCCTTGA ACATCACCGA CCTTGATCCG CTGCATTATG ATCTGCTGTT TGAGCGCTTC TTAAACCCCG AGCGTGTGTC CATGCCTGAC TTTGATATCG ACTTTTGTAT TGAAGGGCGT GACCGCGTCA TTGAATACGT GGCCAGTCAA TATGGCCGTG AGGCGGTGTC GCAGATTATC ACCTTTGGTA CCATGGCGGC TAAAGCTGTG GTGCGAGACG TGGCTCGTGT CCAAAGTAAA TCTTATGGCT TGGCTGATAA AATCTCCAAG CTTATTCCAA AGACGCCCGG TATCTCTTTA AAAGACGCCC TACTCGAGGA GCCTCAGCTT AAGGATTTGC TGTCTAATCC GGACAACATG GACTATGAAG ATGCCAATGA AATCTGGGAG ATGGCCATTA AGCTTGAGGG CATCACTCGT AACGTCGGTA AGCATGCCGG TGGGGTACTA ATCGCCCCAA ACAAAATCAC CGACTTTAGT GCGATTTATT GTGATGAAGA AGGTCACCGG GTTAGCCAAT TCGACAAAGA TGACGTAGAG TCTGTCGGCC TAGTTAAGTT CGACTTCTTA GGTCTACGCA ACCTAACGGT TATCAATGCC GCTGTCAAAA ACATCAACGA GCGCCGTGCT CGTGAGAATA AGCCCGCTTT AGAGCTTGAA GACTTACCGC TTGATGATAC AAATGCCTAT AAGCTGCTAC AAGACGCCAA AACCACAGCG GTGTTCCAGC TAGAGAGCTC AGGTATGAAA AAATACCTGG CCAAGCTGCA GCCGACCAAC ATCGAAGACG TTATCGCCAT GTGTGCGTTG TATCGCCCCG GCCCATTAGA CGCTGGCATG GTAGAGATGT ATATTGACCG CAAACATGGG CGTGAAGAGG TGGTGTATGA TCACCCAAAC CTTGAGCCGA TTTTAGAAAA CACCAATGGG GTTATTGTCT ACCAAGAGCA GGTAATGCAA ATCTCACAGG TCATGGCTGG CTATAGCTTA GGCGGCGCTG ACATGCTGCG CCGTGCCATG GGTAAAAAGA AACCTGAAGA GATGGCCAAA CAGCGTGACA TTTTTGTGAC CGGTGCCACA GCACAAGGTA TTGACCCTGT CATCTCTGGC GGTGTGTTTG ATTTGATGGA AAAATTCGCC GGTTACGGCT TTAACAAGTC GCACTCAGCC GCTTACGGGG TACTTGCCTA TCAAACGGCT TATCTCAAAT ATTACTACCC AGCTGAGTTT ATGGCAGCAG TCCTTACCTC AGATATGAAC AACACCGATA ACGTGGTGTT CTTCATTAAC GATTGCCGTG AAAACTTCGA TCTTAGCGTC GATAACCCCT CAGTAAATCG AAGTGAATGG CACTTTGTGG CCGATACTCC CACCAACATC ATCTATGGTT TAGGTGCCAT TAAAGGCGTC GGTGAAGGCG CGGTAGATTC TATCGTGCAA GCACGTCGCC AAGGGGGTAA GTTTACAGAT CTTTATGATT TTTGCCGCCG AGTAGATATC AAAAAGGTAA ACAAGCGCAC CTTAGAGGCG TTAATTAAAT CTGGCTGCTT TGATGACTTT GCCATTACCC AGCGCCCAGA TTTAGCAGCA GATGAGCGCC ATCAGATTCG CGGTGCGTTA ATGGCACAGC TGCCAAGTGC AGTACAAGCG GCGGAACAAG AGCGTCAAAA TAACGAAATG GGCATGATGG ACTTATTCAG TGAAGTCGAT AATGCCACCA CCGCACCGCC ACTGCCTACA GATAGCGGTC TGATTTGGGG AGACAAGCAC CGTCTCAAAG CTGAAAAAGA CACCCTAGGG CTTTATTTAA CCGGTCATCC CCTAGATCAA TACCGCAAAG AGGTGGCTGT TTATACCTCA AATGCCCGTT TAGATAGCTT GGCAGATACT GGCTATAACG GCAGTACTTT TTTTGCCGGT TTGATTATGG ACATCGCAAA CTTTGGTAAC CGCTGCGTCA TTACACTTGA TGATGGCACA GCCCGTCTTG AGGTTAGCTG CTATGCTGAG CGTTTTAACC GCATTAAAGA CAAGCTCAAG GTCGATGAGG TAATTGTTAT CAAAGGCGGT ATTCGAGACC GTGATGGCCG GTTATTCGCC CGTTTAGACA ATGCTTATAC CCTGCTTGAA TGCCGTCAAC GTTGGGTAAA AAAGATAAGT ATCAAGATTC ACAGCCAAAA CACCTTGTTG CTTGACTCAT TACAGCCCTT ACTAAAGCCT GCTCAGAGTC ATCTCATTCC AAATCATCAA AGCCCCGCCT TCGATGAAGA CAGTGATGAC GGCAATTCAA TGGAAGCTTA CTATAACGGT AACTCGGATA TGACAGCGGC TCCGGTAGCA CAAAACGATG GCTGTATTCC TATCGCTCTA AACATCTATA CCGACTTTGC CATTGCCAAT GTCAGTTTAA ATGACAACTG GCGTCTGTAC CCCACAGATG ACAATTTAAT ACAGCTGGGC ACCTTAGTAC CCCAGGACAA CTTGTATTTC CATTACCAGT AG
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Protein sequence | MAFVHLGIHS EFSITDSIIR IKPMVKAAAA DGQMALALTD LSNLYATVKF YRACLDAAIK PIIGAEIILD DEHTRLTLLA MNNEGYQSIT RIVSLGFTDG RMNPDNRGTP IVNKAHLLDN SAGVIVLFTE KSDVGQALLG ANPERGHQLI SEYQAVFGDR LYFAIKRTKR ALEDTFIEQA ILAGQRHGIA TVAHNDVRFL EEEDFDAHEA RVCIASSHVL ADPNRPHDYS SEQYLKTQAQ MTELFSDIPQ VVQNTVILAQ RCNVTLTLGI NVLPEFPVPE GETIESFFRA ESQRGLEARL DKLYPVSERD ETWPEIRRPY DERLEHELNI ILEMGFPGYF LIVMDFIRWA KANGVPVGPG RGSGAGSLVA YALNITDLDP LHYDLLFERF LNPERVSMPD FDIDFCIEGR DRVIEYVASQ YGREAVSQII TFGTMAAKAV VRDVARVQSK SYGLADKISK LIPKTPGISL KDALLEEPQL KDLLSNPDNM DYEDANEIWE MAIKLEGITR NVGKHAGGVL IAPNKITDFS AIYCDEEGHR VSQFDKDDVE SVGLVKFDFL GLRNLTVINA AVKNINERRA RENKPALELE DLPLDDTNAY KLLQDAKTTA VFQLESSGMK KYLAKLQPTN IEDVIAMCAL YRPGPLDAGM VEMYIDRKHG REEVVYDHPN LEPILENTNG VIVYQEQVMQ ISQVMAGYSL GGADMLRRAM GKKKPEEMAK QRDIFVTGAT AQGIDPVISG GVFDLMEKFA GYGFNKSHSA AYGVLAYQTA YLKYYYPAEF MAAVLTSDMN NTDNVVFFIN DCRENFDLSV DNPSVNRSEW HFVADTPTNI IYGLGAIKGV GEGAVDSIVQ ARRQGGKFTD LYDFCRRVDI KKVNKRTLEA LIKSGCFDDF AITQRPDLAA DERHQIRGAL MAQLPSAVQA AEQERQNNEM GMMDLFSEVD NATTAPPLPT DSGLIWGDKH RLKAEKDTLG LYLTGHPLDQ YRKEVAVYTS NARLDSLADT GYNGSTFFAG LIMDIANFGN RCVITLDDGT ARLEVSCYAE RFNRIKDKLK VDEVIVIKGG IRDRDGRLFA RLDNAYTLLE CRQRWVKKIS IKIHSQNTLL LDSLQPLLKP AQSHLIPNHQ SPAFDEDSDD GNSMEAYYNG NSDMTAAPVA QNDGCIPIAL NIYTDFAIAN VSLNDNWRLY PTDDNLIQLG TLVPQDNLYF HYQ
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