Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1214 |
Symbol | |
ID | 5206760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 1493539 |
End bp | 1494309 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640599434 |
Product | pseudouridine synthase |
Protein accession | YP_001280113 |
Protein GI | 148653020 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0262969 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0773079 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATATTG AAAGCGGCAC CGATAACCAA ATTGATAATA AAATAGATAT TATCTATGAA GATGAGCATC TGGTAGCAAT TAATAAAGAA GCGGGTCTAT TGGTGCATCG CAGTTGGCTT GATAAGGGTG AGACACGATT TGCAATGCAA CTAACCCGTG ATGCCGTAGG TTGCCATGTC TTTCCAGTAC ATAGGTTAGA CAGGCCAACA TCGGGCGTAT TATTGTTTGC TAAGAGCGCT GCTGTGGCAC GCAGCTTGAC CGAAGCTTTC ACTGAGCGCA AGGTTACTAA ACGCTATTTA GCGGTGGTGC GCGGCTTTAT GACAGAGCAG GGCAGCGTTG ATTATGCGTT AAGCTTTAAG CCCGATGCCA TCGCTGATAA GTTTGCCAAC TTAGACAAAC CTGCTCAAGA AGCGGTCACT CACTGGCAGA GCTTAGCCCA GATTGAGCTG CCATTTGCAG TATCAAAAAA GCACGATACT AGCCGCTATA GTCTTATGCG TTTAATACCT GAGACGGGGC GAAAACATCA GCTACGCCGT CACATGAGAC ATTTGTTCCA TCACATCATA GGTGACACCA GCTACGGTGA CGGACGCCAC AATAAATTTT TTCGTACTCA ATATGATTGC ACGCGCATGC TGTTACATGC TCAGACTTTA TCGCTCACTC ATCCTGTTAC TGGCGAGCCG TTGATGCTCG AAGCAGGTTT TGACGATCAA TGGACTCGAA TTTTGGAAGC GTTTTCTTGG ATAGATAGTG CAAAACCTTA G
|
Protein sequence | MDIESGTDNQ IDNKIDIIYE DEHLVAINKE AGLLVHRSWL DKGETRFAMQ LTRDAVGCHV FPVHRLDRPT SGVLLFAKSA AVARSLTEAF TERKVTKRYL AVVRGFMTEQ GSVDYALSFK PDAIADKFAN LDKPAQEAVT HWQSLAQIEL PFAVSKKHDT SRYSLMRLIP ETGRKHQLRR HMRHLFHHII GDTSYGDGRH NKFFRTQYDC TRMLLHAQTL SLTHPVTGEP LMLEAGFDDQ WTRILEAFSW IDSAKP
|
| |