Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1145 |
Symbol | |
ID | 5206524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 1400106 |
End bp | 1401554 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640599365 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001280044 |
Protein GI | 148652951 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000215918 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAATA ATTCTAATAA TCAAGAAATC ACTAACACCA CCGCCACTTC ATTGGCATCA GATTTACAGC CCAAATTCAC TTTATCTGCG GTTCAAGCCA AGTTTTTGCC TTATGTTCTT GCTGTCGCTT TGTTTATGCA AATTTTGGAT GCGACTATCT TAAACACGGC CCTGCCGGAA ATGGCGCTGG CGTTAGGTGA GTCGCCGCTC AAGATGCAGT GGGCTGTAAT CAGCTATGCA TTAACTTTAG CCATCTTTAT CCCAATAAGC GGATTTATGG CCGACAAGTA TGGGACTCGC AAAGTATTCT TAACTGCGAT TGTACTGTTT AGCATTGGCT CAATCTTCTG TGCCATGTCC CCTAATCTGG ATATCTTGGT CGCCTCTCGC ATACTACAAG GTGTGGGCGG AGCAATGATG ACACCCGTGG CCCGCTTGAT ATTGGTCAAG TCCTATCCGC GCAACCAGCT ACTGACGGTG ATGAACTTTG CCGTTATCCC AGCTTTGATA GCGCCCCTTG TTGGCCCGCT GGTTGGCGGT TATCTGGTGC AATATGCCAG CTGGCACTGG ATTTTTTTGA TTAATATTCC GATGGGGATA CTGGGCTTTC TCCTTGGTTT TAAATTGGTA CCTGATATCA AAGAAGCCGC TGGCAAGTTG GACTGGTTTG GTTTTGGTCT ATTTGCGCTC GCCGCTGGAT TATTGACGCT GGCAGTTGAG CTGTTATCCA AGCCAGGAGA GGCCATCCCA GGCTTTGTTC TTATCGCGGC CGCACTTGGC TTGTTACTCA TGTATGTGCG CCATGCCCGA AAGGCAGGCA ACCCTATTTT TCCGCTGTCG TTATTTGATG TTCGAACCTT TAGAATTGGT ATCACCGGTA ACTTATTTAC CCGACTTGGT ATCAGTGCTG TGCCCTATTT ATTACCGCTA TTGTTACAGG TGGCATTTAA ATATACCCCA TCGCAGGCAG GCTGGTTGTT AACTCCTATT GCTGTCGGCG CCATGGGCAT CAAGCCTTGG GTAAGTAAAA TCATTCAGCG CTTTAGCTAC CGCAAAGTAT TGGTCACCAA TACCACCATC CTTGGTATTT TGATTATTTT ATTGGCGCAG CTAAATGCCT CGATACCTTG GTACTATATT GCACCGCTTT TGGTGATTAT GGGGGCATGT AACTCAATGC AGTTTAGCGC CATGAACACC ATTACTATCG GTGATCTAGA AGGCAGTCAA ACCAGTAGTG GTAATAGCTT GATGGCTGTT AATCAGCAGT TGGCCATTAG TTTTGGTATT GCTTTTGGCG CCACCATATT GAGCGTCTTT AGCGATAGGC TTAACTTTGA GATTGTTAGT GCCTTTCATG CCACCTACTA TGTGCTGGGT ATTATCACCA TCATCTCTGG GCTGTCATTT TTAAGATTAA AACCTGAAGA TGGCCGCGGC TTATACTAA
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Protein sequence | MPNNSNNQEI TNTTATSLAS DLQPKFTLSA VQAKFLPYVL AVALFMQILD ATILNTALPE MALALGESPL KMQWAVISYA LTLAIFIPIS GFMADKYGTR KVFLTAIVLF SIGSIFCAMS PNLDILVASR ILQGVGGAMM TPVARLILVK SYPRNQLLTV MNFAVIPALI APLVGPLVGG YLVQYASWHW IFLINIPMGI LGFLLGFKLV PDIKEAAGKL DWFGFGLFAL AAGLLTLAVE LLSKPGEAIP GFVLIAAALG LLLMYVRHAR KAGNPIFPLS LFDVRTFRIG ITGNLFTRLG ISAVPYLLPL LLQVAFKYTP SQAGWLLTPI AVGAMGIKPW VSKIIQRFSY RKVLVTNTTI LGILIILLAQ LNASIPWYYI APLLVIMGAC NSMQFSAMNT ITIGDLEGSQ TSSGNSLMAV NQQLAISFGI AFGATILSVF SDRLNFEIVS AFHATYYVLG IITIISGLSF LRLKPEDGRG LY
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