| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0888 |
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| Symbol | |
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| ID | 5204945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 1053668 |
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| End bp | 1056898 |
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| Gene Length | 3231 bp |
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| Protein Length | 1076 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640599107 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001279788 |
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| Protein GI | 148652695 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0636311 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000716366 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCACGAT ATTTTATTAA CCGCCCTATT TTTGCATGGG TAATTGCAAT TTTAGTCATG
CTATTGGGTG TTATTTCGGT CATTAATTTG CCGATTGAGC AATACCCGCG CATTGCACCG
CCAACCATTA AGGTCAGCGC CACCTATCCA GGTGCTAACG CACAGACCGT AGAGGACTCT
GTGGTGCAGA TTATTGAGCA GCGCATGAAA GGTCTAGATG GATTGATGTA TATGTCCTCT
AGCTCCTCCT CAACCGGTTC AGGCTCAGTC ACCTTAACCT TTGAAAACGG TACCGATCCA
GATACCGCTC AGGTACAGGT ACAAAACAAA CTACAAGCGG CCATGAGCTC GCTACCTGAA
ACAGTACAGC GTCAAGGGGT CAACGTTAAC AAGTCCTCTA GCAGCTTCTT AATGGTACAA
GCCTTCGTCT CTGAAGATGG CTCTATGGAC CGCTCAGACA TTGCTGACTA TGTGGCCTCA
AACGTGGTTG ATCAGCTTAG CCGTGTGGAA GGTGTGGGTG ACATTAACTT ATTTGGCTCC
TCTTATGCAA TGCGTGTCTG GTTAGACCCT GCTCGCCTGC GTAGCTATAA TTTAGTACCC
TCAGATGTGG TCAATGCCAT TCGAGCCCAA AACGCTCAGG TCTCTGCCGG TCAATTGGGT
CAAGCCCCAG CAGATACTGA CAAACAGGTC ATTAACGCCA CCGTCAGTGT ACAAAGCTAT
CTAAAAACAG CTGAAGAATT CTCAAACATA TTAGTGAAAA CCGATGGCAC AGGCGCACAA
GTACGCTTAG GTGATGTGGC ACGTGTCGAG ATGGGCAGTG AAAACTACAG TGTCAATGCC
TTATATAATG GTAAAGAAGC CGCTGGTTTG GGTATTTCAT TAGCACCTGG CTCTAACGCA
CTGGCCACCC GTGAGCTTGT CGCTGAGCGT ATGACGCAGC TTGAAGCCAA CTTCCCTAAA
GGCTTAACTG CCGTTGTACC TTATGACACC ACCCCATTCG TTAAGCTGTC TATTGAACAA
GTGGTTCATA CCTTACTAGA AGCGATTGCT CTGGTATTTG TGGTGATGTT CTTGTTCTTA
CAAAACTGGC GTGCGACTAT TATCCCAACG CTTGCAGTAC CTGTTGTTTT GTTAGGTACT
TTTGGTGTGC TGTATGTCGC AGGCTTTAGT ATCAACGTAT TGACCATGTT TGCCATGGTA
CTGTCCATCG GTCTACTGGT GGATGACGCG ATTGTTGTTG TGGAGAACGT GGAGCGTATT
TTAGAAGAAA ACCCTGAGAT ATCAATCAAA GATGCCACAT TCCAATCCAT GCGCGAAATT
AGTAAAGTGG TTATTGGTAT TGCGCTCATT CTATCTGCCG TTTTCGTACC TATGGCCTTC
TTTGGCGGCT CAACAGGTGT GATTTATCGT CAGTTCTCAA TCACTTTAAT CACCAGTATG
GTGCTGTCTG CCCTAGTGGC CTTAATATTC ACTCCTGCAT TATGTGTGAC CTTACTTAAG
CGTCAAAAAA ATCATGGCGA GGAGAAAAAA GGTTTCTTTG GTTGGTTTAA CCGCAGCTTT
GACAAAACCA GTAAAGCCTA TGAACGCTTT ATCGGTAAGA GTATCAATCT AAAATGGCTA
TACTTAATAG GATATGCGGC AATCATTGGC CTTATGGCTG TGGTTTTCCT ACGTATTCCT
GGCTCATTTT TACCCGAAGA AGATCAGGGT ATTATGATTA CCTTAGTACA GCTGCCCTCA
GGCTCAACGT TAGATGAGAC CCAAGAAGTA CTGGATAAAG TCAGGGGCTA TTACGACAGT
CAAGAAAAAG ACAACGTCGC CTCTGTGTTT ACAGTCGCCG GCTTTAGTTT TGCCGGTCAA
GGTCAAAACA TGGGTCTGGC CTTCGTGCGG TTAAGCGACT GGGCGAATCG TAAAGGGGAA
CAAAACAGTG CCCAAGCTGT GGCCGGACGT GCCATGGGCT ATTTCTTTAC CCAATTAAAT
GAAGCTCAAG TATATGCCAT TGTTCCCCCT GCCATTACTG AGCTAGGTAA CGCCAGTGGT
TTTGACTTAA TGCTACAAGA TGTGGGTAAC GTGGGTCATG ACGGCTTATT AGCCGCACGT
AACCAACTGC TGGGTATGGC GTCACAAAAT GATCAAGTCG CTGGTGTTCG CCCTAATGGT
CAAGAAGATG CGCCTCAGCT CAAAGTTAAT ATTGACCAAG AACAAGCGGC CGCTTACGGT
CTGGCTATGA GCGACATTAA CAGCTTACTA TCTACAGCTT GGGGCTCATC TTATGTCAAC
GACTTCGTTG ATAGAGGCCG TATCAAACGC GTCTTTGTTC AAGGTGAAGC TGATAGCCGT
ACCAACCCTG AAGACATTAA CAAGTGGTAT GTGCGTAACA AGACTGGTGA TATGATTTCT
ATGGGCGGCT TCTCAAGCAG TGAGTGGCAA AATGCCTCAC CTAGCTTAAC GCGCTACAAC
AGCTTTCCTT CTATGAACAT CCAAGGCAGC GCTGCACCAG GTTTAAGTAC CGGTGAAGCC
ATGGCAGCTA TGGAGGAGAT GGTCAGCCAA TTGCCACCAG GTGTGGGCTA TGAGTGGACT
GGTATGTCAC TTGAAGAGAA AAAATCAGGC GCTCAGGCAC CAATGTTATA TGCTTTGTCT
ATTCTTGTGG TGTTCTTATG TTTGGCCGCT TTGTACGAAA GCTGGTCCAT CCCATTTGCA
GTGCTGCTAG TTATTCCGCT TGGGGTATTG GGTGCAGTCG TGCTAACTTG GTTTAGACAG
TTTGCTAACG ACATCTATCT ACAAGTGGGT TTATTAACCG TGGTAGGTCT GTCTGCTAAG
AACGCCATCT TGATTATTGA ATTTGCTAAA GAGCACCAAG AGGAAGGCTA CAGCTTACGT
GAGGCGGTAA TGACAGCAGC AAGACAACGT CTGCGTCCTA TTATCATGAC ATCACTGGCT
TTCGGTTTTG GTGTGGTTCC TTTATACTTA GCAACAGGTC CAGGTGCCGG TAGCCAAAAC
GCCATTGGTA CCAGTGTGGT CGGTGGTGTG ATTACCGCAA CTTTATTAGG TATCTTCTTT
ATTCCTATGT TCTATGTGTG GGTACGCTCT GTATTTAAAT ATAAGCCTGA GGGTCCAAAA
GATGGCTCAG GTGGCGCTGC TGCTCAGCCG CATGCGACAA CCCCTGCTCT TTCAGCTAAT
GGCACAAGTG CAGCCTCTAC CCCAGCAAAT CTTGGAGACA ACACTCAATG A
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| Protein sequence | MSRYFINRPI FAWVIAILVM LLGVISVINL PIEQYPRIAP PTIKVSATYP GANAQTVEDS
VVQIIEQRMK GLDGLMYMSS SSSSTGSGSV TLTFENGTDP DTAQVQVQNK LQAAMSSLPE
TVQRQGVNVN KSSSSFLMVQ AFVSEDGSMD RSDIADYVAS NVVDQLSRVE GVGDINLFGS
SYAMRVWLDP ARLRSYNLVP SDVVNAIRAQ NAQVSAGQLG QAPADTDKQV INATVSVQSY
LKTAEEFSNI LVKTDGTGAQ VRLGDVARVE MGSENYSVNA LYNGKEAAGL GISLAPGSNA
LATRELVAER MTQLEANFPK GLTAVVPYDT TPFVKLSIEQ VVHTLLEAIA LVFVVMFLFL
QNWRATIIPT LAVPVVLLGT FGVLYVAGFS INVLTMFAMV LSIGLLVDDA IVVVENVERI
LEENPEISIK DATFQSMREI SKVVIGIALI LSAVFVPMAF FGGSTGVIYR QFSITLITSM
VLSALVALIF TPALCVTLLK RQKNHGEEKK GFFGWFNRSF DKTSKAYERF IGKSINLKWL
YLIGYAAIIG LMAVVFLRIP GSFLPEEDQG IMITLVQLPS GSTLDETQEV LDKVRGYYDS
QEKDNVASVF TVAGFSFAGQ GQNMGLAFVR LSDWANRKGE QNSAQAVAGR AMGYFFTQLN
EAQVYAIVPP AITELGNASG FDLMLQDVGN VGHDGLLAAR NQLLGMASQN DQVAGVRPNG
QEDAPQLKVN IDQEQAAAYG LAMSDINSLL STAWGSSYVN DFVDRGRIKR VFVQGEADSR
TNPEDINKWY VRNKTGDMIS MGGFSSSEWQ NASPSLTRYN SFPSMNIQGS AAPGLSTGEA
MAAMEEMVSQ LPPGVGYEWT GMSLEEKKSG AQAPMLYALS ILVVFLCLAA LYESWSIPFA
VLLVIPLGVL GAVVLTWFRQ FANDIYLQVG LLTVVGLSAK NAILIIEFAK EHQEEGYSLR
EAVMTAARQR LRPIIMTSLA FGFGVVPLYL ATGPGAGSQN AIGTSVVGGV ITATLLGIFF
IPMFYVWVRS VFKYKPEGPK DGSGGAAAQP HATTPALSAN GTSAASTPAN LGDNTQ
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