| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0555 |
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| Symbol | |
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| ID | 5204668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 663433 |
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| End bp | 664662 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640598770 |
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| Product | succinyldiaminopimelate transaminase |
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| Protein accession | YP_001279460 |
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| Protein GI | 148652367 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00147864 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCCAA AATTAGAGCT GCTGCACCCT TATCCGTTTG CCAAGATGGC TACCTTATTG
GCACACTCTA CCCCAGCCCC TGAGTTTGAA ACCATCAAGC TTGGTATTGG CGAGCCGAAG
CATGAGCCGC CCTCTTTTGT GTTACAGACG CTAGCGGACA ACCTAATCAA GGTACAAAAC
TATCCCTCAA CCAGTGGCTT ACCTGAGCTA CGCCAAGCCA TTGCTGATTG GCTACAACAC
CGCTTTAGCT TAAATCGCAT CAGTGCAGAC TCACAGATTA TCCCGGTGAT GGGTACTCGT
GAGGCCTTAT TTAGCTTCGT CCAAGCCGCT ATTAACTTAG ACGCAGGCAA TGATGTATCT
GATAAACCCC TCATTGTCAT GCCAAACCCT TTTTATCAGA TTTATGAAGG TGCCGCTTTG
CTTGCCGGCG CAGAGCCCTA TTTTGTGCCT TGTACTGCGG ATAATGATTT CAAGGGCGAT
TACCGCTCGG TGCCAAGTGA CGTTTGGGAG CGTACCCAGC TGGTCTTTGT GTGTAGCCCC
AACAACCCCA CTGGAGCAGT ATTTGATGCC GATGATTGGC AGGCATTGAT TGAGCTGTCG
GACCAACACA ACTTTATCAT CGCCAGTGAT GAGTGCTATA GCGAGCTTTA TTTTGAGTCG
CCTCCTGTTG GGCTACTTGA AGTGTGTGCG CAGCTGGGCC GCGATGATTA CAAGAACTGC
GTGGTGTTCC ACTCGTTGTC CAAGCGCTCA AATCTGCCAG GGCTACGCTC AGGCTTTATC
GCAGGTGATG CCAGCTTATT ACAGCCGTAC CTGCAATATC GTACCTATCA AGGCGCCGCA
TTACCCATTC ATCACCAACT GGCCTCTATC GCTGCTTGGC AAGATGAAGC ACACGTTGAG
CACAACCGCA CGCTTTATGC CCAAAAGTTC GATTTATGGA TCAGTGAGCT GGGTGAGGCA
TTAACTCTTA CAAAACCAGA TGCTGGATTT TATTTATGGG TACAAGTGCC CCCACCCTTT
GTCGATGAAC AAGGCGAGCC AGATGACGAG GCCTTTGTCA AAGCCTTATA TGAACAGGTC
AATATCAATG CGCTGGCAGG ACGTTACTTA TCACGTGAAG TTGATGGCGT AAATCCAGGT
AAAGGCTTTG TCCGCCTAGC ACTGGTGGCC AGTGTCGATG AAAGCCGGCA AGCCATTGAA
CGTATCAAAG GATTATTGGC ACAGCCTTAG
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| Protein sequence | MNPKLELLHP YPFAKMATLL AHSTPAPEFE TIKLGIGEPK HEPPSFVLQT LADNLIKVQN
YPSTSGLPEL RQAIADWLQH RFSLNRISAD SQIIPVMGTR EALFSFVQAA INLDAGNDVS
DKPLIVMPNP FYQIYEGAAL LAGAEPYFVP CTADNDFKGD YRSVPSDVWE RTQLVFVCSP
NNPTGAVFDA DDWQALIELS DQHNFIIASD ECYSELYFES PPVGLLEVCA QLGRDDYKNC
VVFHSLSKRS NLPGLRSGFI AGDASLLQPY LQYRTYQGAA LPIHHQLASI AAWQDEAHVE
HNRTLYAQKF DLWISELGEA LTLTKPDAGF YLWVQVPPPF VDEQGEPDDE AFVKALYEQV
NINALAGRYL SREVDGVNPG KGFVRLALVA SVDESRQAIE RIKGLLAQP
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