| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0535 |
|---|
| Symbol | |
|---|
| ID | 5206839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 638918 |
|---|
| End bp | 640801 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640598750 |
|---|
| Product | ATP-dependent metalloprotease FtsH |
|---|
| Protein accession | YP_001279440 |
|---|
| Protein GI | 148652347 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000788844 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000000175333 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAAA ATACCTTATT GTGGCTAGTT GTTATCGGCG TATTAGTGCT GGTATTTAGC
AACTTTGATA GCAGTAATGA GCCTGATACG CTCAATTACT CTGAGTTTGT AACTCAAGTC
ACTGAGGACC AAATAAAAAG CGTCAAGATC GACGGTGAAC AAATCACTGG CGAAAAAGTC
AACGGCTCGG AGTTCGAGAC CGTTCTTCCT GCAGTGGCGG ACGCAGAGTT AATGCCTACG
TTGCGTGAGC ATAAGGTTGA GGTGCAAGGG GCAGCCCCCG AGCGTCAAAG CATTATGATG
CAGTTATTAA TTGCAAGCTT CCCTGTTCTG CTAATTATCG GTATCTTCTT GTTCTTCATG
CGTAATATGC AAGGCGGCGC TGGCGGTAAA GCCGGTGGCC CCATGAGCTT TGGTAAATCC
AAAGCCAAAA TGCTGGGTGA AGACCAAATT AAAGTGACCT TTAATGATGT GGCCGGTGCA
GAAGAAGCCA AAGAAGAAGT GGTCGAAGTG GTCGATTTCT TAAAAGACCC TGACAAATTC
ACCAAATTGG GTGCCACCAT TCCTCGTGGT ATCTTAATGG TGGGCCCACC AGGTACGGGT
AAAACCTTAC TTGCTAAAGC CATTGCCGGT GAAGCCAAAG TACCTTTTTT CTCAATCTCA
GGTTCTGACT TTGTTGAAAT GTTCGTTGGT GTGGGCGCAT CACGTGTGCG TGATATGTTT
GAGCAAGCCA AAAAGAATGC GCCTTGTATT ATCTTTATCG ATGAGATTGA TGCCGTAGGC
CGTAGCCGTG GCACAGGCAT GGGTGGGGGT AATGATGAGC GCGAGCAGAC CCTAAACCAG
CTATTGGTAG AAATGGATGG TTTTGAAGGT AACGACGGTA TTATCGTTAT TGCTGCCACC
AACCGCGCTG ATGTACTTGA TAAAGCCTTA TTACGCCCAG GTCGTTTTGA CCGTCAGGTG
CATGTGGGCT TACCAGACAT CAAAGGCCGT GAAGAGATTT TAAAGGTGCA TTTACGCAAA
CTGCCAGCTA CCATTGGTGT AGATGTGAAT GCTCTTGCTC GTGGTACGCC AGGTTTTAGT
GGTGCGCAGA TTGCAAACTT AGTGAATGAA GCTGCTTTAT TTGCTGCTCG TCGTAATAAG
ACCAGTGTCG ATATGAACGA CTTTGAGGAT GCCAAAGACA AGCTATTTAT GGGTCCTGAG
CGTAAGTCTA TGGTGCTGCG TGAAGAAGAA CGTCGTGCGA CCGCCTATCA CGAAGCTGGC
CATGCTCTAG TCGCTGAGAT GCTACCAGGC ACCGACCCTG TGCATAAGGT TACCATCATG
CCGCGTGGTT GGGCACTGGG TGTGACTTGG CAGCTGCCTG AGTTTGATCA GACCAGCTTA
GATAAGTCAA AGATGTTGAA TGATATTGCG ATTTTATTTG GCGGGCGTAT TGCAGAAGAG
GTCTTTGTTA ATCAAAAGAC CACAGGCGCA TCAAACGACT TTGAACGTGC GACTAAAATG
GCGCGCGCTA TGGTGACCAA GTATGGTATG TCAGATGCAT TGGGAGTGAT GGTTTATGAA
GATGATGATG CCTCTCAAGG TTATTTCGGC GGTGGTGCCC GTGCTATTTC TGAAGCCACA
CAGCAAAAAG TGGATGAAGA GATCCGTCGT ATTTTAGAAG AACAGTACGC CATCGCTCGT
GAGATTATCG AAGCCAATAA AGATAAGATG CATGCTATGG TTGAAGCGCT GATGAATTGG
GAAACTATTG ATAGAGATCA ATTGCAAGAT ATCTTGGCAG GTAATGAGCC ACGTGCACCT
CGCAATTATC AAGAAAAAGA TGTTACCCCA AAAAAGGAAG TCAGCTCTTC AGGTCCAACG
CCGCCACCTT TACCTGCAAT GTAG
|
|---|
| Protein sequence | MVKNTLLWLV VIGVLVLVFS NFDSSNEPDT LNYSEFVTQV TEDQIKSVKI DGEQITGEKV
NGSEFETVLP AVADAELMPT LREHKVEVQG AAPERQSIMM QLLIASFPVL LIIGIFLFFM
RNMQGGAGGK AGGPMSFGKS KAKMLGEDQI KVTFNDVAGA EEAKEEVVEV VDFLKDPDKF
TKLGATIPRG ILMVGPPGTG KTLLAKAIAG EAKVPFFSIS GSDFVEMFVG VGASRVRDMF
EQAKKNAPCI IFIDEIDAVG RSRGTGMGGG NDEREQTLNQ LLVEMDGFEG NDGIIVIAAT
NRADVLDKAL LRPGRFDRQV HVGLPDIKGR EEILKVHLRK LPATIGVDVN ALARGTPGFS
GAQIANLVNE AALFAARRNK TSVDMNDFED AKDKLFMGPE RKSMVLREEE RRATAYHEAG
HALVAEMLPG TDPVHKVTIM PRGWALGVTW QLPEFDQTSL DKSKMLNDIA ILFGGRIAEE
VFVNQKTTGA SNDFERATKM ARAMVTKYGM SDALGVMVYE DDDASQGYFG GGARAISEAT
QQKVDEEIRR ILEEQYAIAR EIIEANKDKM HAMVEALMNW ETIDRDQLQD ILAGNEPRAP
RNYQEKDVTP KKEVSSSGPT PPPLPAM
|
|---|
| |