| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0380 |
|---|
| Symbol | |
|---|
| ID | 5205078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 455216 |
|---|
| End bp | 457063 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640598594 |
|---|
| Product | GTP-binding protein TypA |
|---|
| Protein accession | YP_001279285 |
|---|
| Protein GI | 148652192 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000238787 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00000136232 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAACG AAATACAAAA CTTACGCAAT ATCGCTATCA TAGCGCACGT CGATCACGGT
AAAACTACCT TAGTTGATAA ACTATTACAT CAATCTGGTA CTTTTGGTGA CCGTGCAAAT
ATTGCGGAAC GCGCAATGGA TTCAGGCGCA ATTGAGCAAG AACGTGGTAT TACGATTCTT
GCCAAGAACA CAGCCATTAA ATGGCAGCAT CCCACAAATG GTATTGAATA CCGCATTAAT
ATTGTAGATA CCCCAGGTCA CGCCGATTTC GGTGGTGAAG TTGAGCGTGT TATGTCTATG
GTTGACTGTG TACTATTGGT AGTAGATGCT ATCGATGGCC CGATGCCACA AACTCGCTTC
GTAACTCAAA AGGCATTCGA ACAGGGTTTG AAGCCAATCG TTGTAATTAA TAAAATTGAC
CGTCCAGGCT CACGTCCTGA TTGGGTAATG GATCAAATAT TTGATTTGTT TGACAATCTA
GGTGCCACTG ACGAACAGTT AGATTTCCAT GTGGTTTATG CCTCAGCACT AAATGGTATC
GCTGGTTTAA GTCCTGATAA CCTTGCTGAT GACATGACGC CATTATTTGA GACCATTGTT
GATGTGGTAG AGCCACCTCA AGTGGATGCT GACGCACCAT TTCGTATGCA AATCTCAAGC
CTTGATTACA ACAGCTTCGT TGGTGTAATT GGTATTGGTC GTATTGAGCG TGGTCGTATT
TCAACCAACA CACCAGTTAC TGTGGTTGAT AAAGACGGCA ATACTCGTAA CGGTCGTATT
CTAAAAATCA TGGGCTACCA TGGTCTAGAT CGTATTGATG TTGATGATGC TCAAGCTGGT
GATATCGTAT GTATTACAGG TATTGACGCG TTAAACATCT CAGATACCAT CTGTGATCCT
AGCCATGTAG AAGCATTACC ACCGTTAACC GTGGATGAGC CTACAGTTTC TATGACTTTC
CAAGTCAACA ACTCTCCATT TGCCGGTCGT GAAGGTAAAT TTGTGACCTC GCGTAATATT
CGTGAGCGTT TAGAGCGTGA GTTGATTCAT AACGTAGCAT TACGTGTGGA AGATACTGAA
TCAGCTGAGA AGTTTAAAGT TTCTGGTCGT GGTGAGCTTC ATTTATCTGT ATTGATTGAA
AACATGCGCC GTGAAGGCTT TGAGCTTGGT GTGTCTCGTC CAGAAGTTAT CGTAAAAGAA
GTAGACGGTA AACTACAAGA GCCCTATGAA AACGTTATTT TTGATGTAGA AGAACAGCAT
CAAGGTGCTA TCATGGAGCA AGTAGGTCTA CGTAAAGGCG AAATGACTGA CATGCAATTA
GACGGCAAAG GTCGTATGCG TATTGAAGCG GTTATGCCTG CTCGTGGCCT AATTGGCTTC
CGCTCAGAGT TCTTAACCTT GACTTCAGGT ACAGGTATTC TCACCTCAAG TTTCTCACAT
TACGGTCCAC AAAAGATCGG TGAAGTGGGT GGCCGCACTA ACGGTGTACT GGTTTCAATG
GCGAACGGTG TTTGCTTAGG TTACGCACTA TTTAACCTAC AAAAACGCGG TAAACTATTT
GCTGAACCTC AGCTTGAAGT TTATGAAGGT ATGATTGTTG GTTTAAACTC ACGCAGTGAT
GACATGGTGG TAAACCCAAC CACGGCTAAA CAGTTAACCA ACGTACGTGC CAGTGGTACT
GACGAAGCAT TGACTTTGGT ACCTGCTATT AAGTTTACCT TAGAGCAAGC ACTTGAGTTT
ATTGAAGATG ATGAATTGGT TGAAGTAACG CCAAAGTCTA TTCGTTTACG TAAGAAATAT
TTGTCTGAAA GTGAGCGTAA GCGTCACGGC CGTAAAAAAG AGAAATAA
|
|---|
| Protein sequence | MSNEIQNLRN IAIIAHVDHG KTTLVDKLLH QSGTFGDRAN IAERAMDSGA IEQERGITIL
AKNTAIKWQH PTNGIEYRIN IVDTPGHADF GGEVERVMSM VDCVLLVVDA IDGPMPQTRF
VTQKAFEQGL KPIVVINKID RPGSRPDWVM DQIFDLFDNL GATDEQLDFH VVYASALNGI
AGLSPDNLAD DMTPLFETIV DVVEPPQVDA DAPFRMQISS LDYNSFVGVI GIGRIERGRI
STNTPVTVVD KDGNTRNGRI LKIMGYHGLD RIDVDDAQAG DIVCITGIDA LNISDTICDP
SHVEALPPLT VDEPTVSMTF QVNNSPFAGR EGKFVTSRNI RERLERELIH NVALRVEDTE
SAEKFKVSGR GELHLSVLIE NMRREGFELG VSRPEVIVKE VDGKLQEPYE NVIFDVEEQH
QGAIMEQVGL RKGEMTDMQL DGKGRMRIEA VMPARGLIGF RSEFLTLTSG TGILTSSFSH
YGPQKIGEVG GRTNGVLVSM ANGVCLGYAL FNLQKRGKLF AEPQLEVYEG MIVGLNSRSD
DMVVNPTTAK QLTNVRASGT DEALTLVPAI KFTLEQALEF IEDDELVEVT PKSIRLRKKY
LSESERKRHG RKKEK
|
|---|
| |