Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_0178 |
Symbol | |
ID | 5205961 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 214403 |
End bp | 215509 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640598390 |
Product | IS605 family transposase OrfB |
Protein accession | YP_001279087 |
Protein GI | 148651994 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0675] Transposase and inactivated derivatives |
TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.116307 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.116518 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCC TCAAGCTACG CATCAAAGAC AAACATGCAA ACCAGCTAAA CAAACTAGCT GGGAGTGTTA ACTATGCGTG GAACTATGTT AATGCGTTAA GCTTTGAGCA TTTAAGACGC ACAGGTAAGT GCTTTTCGGC CTATGATTTA AGCCAATACA CCAAAGGCAG TGGTGAGTAT TTAGGCTTGC ACTCGCAAAC TCTGCAAGCC ATTAACGAGA CTCATACCAA ATCTCGTAAG CAGTTTAAAA AAACTAAACT TAATTGGCGA ACCAACCGAC CCGATGCCAA ACGCAAAAGC CTAGGCTGGA TACCCTTTAA AAAATCAGCC ATCAAGTACC TAAATACGAG GCAAAGCGGT AAAAAAGCAC TGAAATCAAC CATTCAATTA TCGCTCTGTA AAGGTCAAAA GCTTATCATA GACGTATTCG ATAGCTACAA TTTGTCTTTG TATCAAATCA ATACGCTTGA GATAGTGCAA GACAGCCGTC ATCGTTGGTA TGCCTGTATT ACCGTCAAAG ATTTTCCTAG ACAAGCAAGT TGCAAAGGCA GCGTTGGTAT TGACTTAGGC TTAAAGCAGT CTGCTACCAC ATCAACGGGC GATAAACTAC AGATTAAGCA GACTCAAAAA TGGGCGAATA AATTAGCAGT CGCCCAGCGT GCAAACAATA AAAGCCGGGT AAAGGCAATC CATGCCAAGA TCAAAAACTC AAGATTAGAT GCCATACACA AATTCACCAC CAAGCTAGTT CAAAATAATG CTTTAATTGT GGTTGGTGAT GTTAAATCAC GCTCATTCAC CAATTCGATG ACCAACCTAG CTAAATCAAC ATACGATGCA GGATGGTTTG AACTCAAAAG ACAACTGGAA TATAAATGCA AGCATGCAGG TTGTCAGTTT GAGATGGTAA ATGAGAGTTA CACTACCCAG ACCTGCTCGT GCTGTCTTAA AATAAGTGAC AGTAGTCCAA AAGGTAGAGC AGGTCTTGGA ATAAGAGGAT GGAGGTGTGC TGAGTGTGGC ACATGGCATG ATAGAGATAT CAATGCTGCT AACAACATCC TTGCGGTCGG GCTTGACCGT CTAGTTGTAG GAATCCCCTC GGTTTAG
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Protein sequence | MKTLKLRIKD KHANQLNKLA GSVNYAWNYV NALSFEHLRR TGKCFSAYDL SQYTKGSGEY LGLHSQTLQA INETHTKSRK QFKKTKLNWR TNRPDAKRKS LGWIPFKKSA IKYLNTRQSG KKALKSTIQL SLCKGQKLII DVFDSYNLSL YQINTLEIVQ DSRHRWYACI TVKDFPRQAS CKGSVGIDLG LKQSATTSTG DKLQIKQTQK WANKLAVAQR ANNKSRVKAI HAKIKNSRLD AIHKFTTKLV QNNALIVVGD VKSRSFTNSM TNLAKSTYDA GWFELKRQLE YKCKHAGCQF EMVNESYTTQ TCSCCLKISD SSPKGRAGLG IRGWRCAECG TWHDRDINAA NNILAVGLDR LVVGIPSV
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