Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_5255 |
Symbol | |
ID | 5193457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5898576 |
End bp | 5900384 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640589738 |
Product | pyruvate carboxylase subunit B |
Protein accession | YP_001270557 |
Protein GI | 148550455 |
COG category | [C] Energy production and conversion |
COG ID | [COG5016] Pyruvate/oxaloacetate carboxyltransferase |
TIGRFAM ID | [TIGR01108] oxaloacetate decarboxylase alpha subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.594563 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCAAGA AAATTCACGT AACCGACACG ATCCTGCGCG ACGCTCACCA GTCCCTGCTG GCTACCCGCA TGCGTACCGA AGACATGCTG CCGATCTGCG ACAAGCTCGA CAAGGTTGGC TACTGGTCGC TGGAAGTCTG GGGTGGTGCC ACCTTCGACG CCTGCGTGCG CTTCCTCAAG GAAGACCCGT GGGAGCGCCT GCGCAAGCTG CGCGCAGCGC TGCCAAACAC CCGCCTGCAA ATGCTGCTGC GCGGCCAGAA CCTGTTGGGC TACCGCCACT ACAGCGACGA CGTGGTCAAG GCCTTCGTCG CCAAGGCGGC GGTCAACGGT ATCGATGTGT TCCGCATTTT CGACGCCATG AACGACGTGC GTAACCTGCG CGTGGCCATC GAAGCGGTCA AGGCCGCCGG CAAGCACGCC CAGGGCACTA TCGCTTACAC CACCAGCCCG GTACACACCA TCGAAGCCTT CGTGAACCAG GCCAAGCAGA TGGAAGCCAT GGGTTGCGAC TCGGTGGCGA TCAAGGACAT GGCTGGCCTG TTGACCCCGT TCGCCACTGG CGAGCTGGTC AAGGCGCTGA AGGCTGAACA GTCGCTGCCG GTGTTCATCC ACTCTCACGA TACCGCCGGC CTGGCTGCCA TGTGCCAGCT CAAAGCTGTG GAAAATGGCG CGGACCACAT CGATACCGCC ATCTCCAGCT TCGCCTGGGG CACCAGCCAT CCGGGTACTG AGTCGATGGT TGCTGCGCTC AAGGGCAGCG AGTTCGACAC CGGCCTGGAC CTGGAGCTTC TGCAGGAGAT CGGCTTGTAC TTCTACGCCG TGCGCAAGAA GTACCACCAG TTCGAAAGCG AGTTCACCGC GGTGGACACC CGGGTGCAGG TGAACCAGGT ACCGGGCGGC ATGATTTCCA ACCTGGCCAA CCAGCTCAAG GAGCAGGGCG CCCTCAACCG CATGAACGAA GTGCTGGCCG AAATCCCGCG TGTGCGTGAA GACCTCGGCT TCCCGCCGCT GGTCACCCCG ACCTCGCAGA TCGTCGGCAC CCAGGCCTTC TTCAACGTGC TGGCGGGTGA GCGCTACAAG ACCATCACCA ATGAGGTGAA GCTGTACCTG CAAGGTGGCT ATGGCAAGGC CCCGGGTGTG GTCAACGAGC AACTGCGTCG CCAGGCTATC GGCAGCGAAG AAGTGATCGA TGTGCGCCCG GCTGACCTGT TGAAGCCGGA AATGGCCAAG TTGCGTAGCG ACATCGGTGC CCTGGCCCGT TGCGAAGAAG ACGTGCTGAC CTTTGCCATG TTCCCGGACA TTGGCCGCAA GTTCCTCGAA GAACGCGAAG CTGGCACCTT GACGCCTGAA GTTCTGCTGC CGATTCCGGA AGCCGGTGCC GTGGCTGCCC CAGGCGGTGA AGGCGTGCCG ACCGAGTTCG TCATCGACGT ACACGGCGAA ACCTACCGCG TCGACATCAC CGGTGTGGGC GTGAAGGCCG AAGGCAAGCG TCACTTCTAT CTGTCGATCG ACGGCATGCC GGAGGAAGTG GTCTTCGAGC CACTCAACGA GTTCGTCAGC GGTGGCGGCA GCAAGCGCAA GCAAGCTACT GACCCTGGCC ACGTAAGCAC CACCATGCCG GGGAACATCG TTGATGTGCT GGTCAAGGAA GGTGACATGG TCAAGGCCGG CCAGGCGGTC TTGATCACCG AAGCCATGAA GATGGAAACC GAAGTGCAGG CGGCCATCGC CGGTAAGGTT GTGGCCATCC ATGTGGCCAA GGGTGATCGC GTGACGCCGG GTGAAATCCT GATCGAGATC GAGGGCTGA
|
Protein sequence | MSKKIHVTDT ILRDAHQSLL ATRMRTEDML PICDKLDKVG YWSLEVWGGA TFDACVRFLK EDPWERLRKL RAALPNTRLQ MLLRGQNLLG YRHYSDDVVK AFVAKAAVNG IDVFRIFDAM NDVRNLRVAI EAVKAAGKHA QGTIAYTTSP VHTIEAFVNQ AKQMEAMGCD SVAIKDMAGL LTPFATGELV KALKAEQSLP VFIHSHDTAG LAAMCQLKAV ENGADHIDTA ISSFAWGTSH PGTESMVAAL KGSEFDTGLD LELLQEIGLY FYAVRKKYHQ FESEFTAVDT RVQVNQVPGG MISNLANQLK EQGALNRMNE VLAEIPRVRE DLGFPPLVTP TSQIVGTQAF FNVLAGERYK TITNEVKLYL QGGYGKAPGV VNEQLRRQAI GSEEVIDVRP ADLLKPEMAK LRSDIGALAR CEEDVLTFAM FPDIGRKFLE EREAGTLTPE VLLPIPEAGA VAAPGGEGVP TEFVIDVHGE TYRVDITGVG VKAEGKRHFY LSIDGMPEEV VFEPLNEFVS GGGSKRKQAT DPGHVSTTMP GNIVDVLVKE GDMVKAGQAV LITEAMKMET EVQAAIAGKV VAIHVAKGDR VTPGEILIEI EG
|
| |