Gene Pput_5255 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_5255 
Symbol 
ID5193457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5898576 
End bp5900384 
Gene Length1809 bp 
Protein Length602 aa 
Translation table11 
GC content62% 
IMG OID640589738 
Productpyruvate carboxylase subunit B 
Protein accessionYP_001270557 
Protein GI148550455 
COG category[C] Energy production and conversion 
COG ID[COG5016] Pyruvate/oxaloacetate carboxyltransferase 
TIGRFAM ID[TIGR01108] oxaloacetate decarboxylase alpha subunit 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.594563 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAAGA AAATTCACGT AACCGACACG ATCCTGCGCG ACGCTCACCA GTCCCTGCTG 
GCTACCCGCA TGCGTACCGA AGACATGCTG CCGATCTGCG ACAAGCTCGA CAAGGTTGGC
TACTGGTCGC TGGAAGTCTG GGGTGGTGCC ACCTTCGACG CCTGCGTGCG CTTCCTCAAG
GAAGACCCGT GGGAGCGCCT GCGCAAGCTG CGCGCAGCGC TGCCAAACAC CCGCCTGCAA
ATGCTGCTGC GCGGCCAGAA CCTGTTGGGC TACCGCCACT ACAGCGACGA CGTGGTCAAG
GCCTTCGTCG CCAAGGCGGC GGTCAACGGT ATCGATGTGT TCCGCATTTT CGACGCCATG
AACGACGTGC GTAACCTGCG CGTGGCCATC GAAGCGGTCA AGGCCGCCGG CAAGCACGCC
CAGGGCACTA TCGCTTACAC CACCAGCCCG GTACACACCA TCGAAGCCTT CGTGAACCAG
GCCAAGCAGA TGGAAGCCAT GGGTTGCGAC TCGGTGGCGA TCAAGGACAT GGCTGGCCTG
TTGACCCCGT TCGCCACTGG CGAGCTGGTC AAGGCGCTGA AGGCTGAACA GTCGCTGCCG
GTGTTCATCC ACTCTCACGA TACCGCCGGC CTGGCTGCCA TGTGCCAGCT CAAAGCTGTG
GAAAATGGCG CGGACCACAT CGATACCGCC ATCTCCAGCT TCGCCTGGGG CACCAGCCAT
CCGGGTACTG AGTCGATGGT TGCTGCGCTC AAGGGCAGCG AGTTCGACAC CGGCCTGGAC
CTGGAGCTTC TGCAGGAGAT CGGCTTGTAC TTCTACGCCG TGCGCAAGAA GTACCACCAG
TTCGAAAGCG AGTTCACCGC GGTGGACACC CGGGTGCAGG TGAACCAGGT ACCGGGCGGC
ATGATTTCCA ACCTGGCCAA CCAGCTCAAG GAGCAGGGCG CCCTCAACCG CATGAACGAA
GTGCTGGCCG AAATCCCGCG TGTGCGTGAA GACCTCGGCT TCCCGCCGCT GGTCACCCCG
ACCTCGCAGA TCGTCGGCAC CCAGGCCTTC TTCAACGTGC TGGCGGGTGA GCGCTACAAG
ACCATCACCA ATGAGGTGAA GCTGTACCTG CAAGGTGGCT ATGGCAAGGC CCCGGGTGTG
GTCAACGAGC AACTGCGTCG CCAGGCTATC GGCAGCGAAG AAGTGATCGA TGTGCGCCCG
GCTGACCTGT TGAAGCCGGA AATGGCCAAG TTGCGTAGCG ACATCGGTGC CCTGGCCCGT
TGCGAAGAAG ACGTGCTGAC CTTTGCCATG TTCCCGGACA TTGGCCGCAA GTTCCTCGAA
GAACGCGAAG CTGGCACCTT GACGCCTGAA GTTCTGCTGC CGATTCCGGA AGCCGGTGCC
GTGGCTGCCC CAGGCGGTGA AGGCGTGCCG ACCGAGTTCG TCATCGACGT ACACGGCGAA
ACCTACCGCG TCGACATCAC CGGTGTGGGC GTGAAGGCCG AAGGCAAGCG TCACTTCTAT
CTGTCGATCG ACGGCATGCC GGAGGAAGTG GTCTTCGAGC CACTCAACGA GTTCGTCAGC
GGTGGCGGCA GCAAGCGCAA GCAAGCTACT GACCCTGGCC ACGTAAGCAC CACCATGCCG
GGGAACATCG TTGATGTGCT GGTCAAGGAA GGTGACATGG TCAAGGCCGG CCAGGCGGTC
TTGATCACCG AAGCCATGAA GATGGAAACC GAAGTGCAGG CGGCCATCGC CGGTAAGGTT
GTGGCCATCC ATGTGGCCAA GGGTGATCGC GTGACGCCGG GTGAAATCCT GATCGAGATC
GAGGGCTGA
 
Protein sequence
MSKKIHVTDT ILRDAHQSLL ATRMRTEDML PICDKLDKVG YWSLEVWGGA TFDACVRFLK 
EDPWERLRKL RAALPNTRLQ MLLRGQNLLG YRHYSDDVVK AFVAKAAVNG IDVFRIFDAM
NDVRNLRVAI EAVKAAGKHA QGTIAYTTSP VHTIEAFVNQ AKQMEAMGCD SVAIKDMAGL
LTPFATGELV KALKAEQSLP VFIHSHDTAG LAAMCQLKAV ENGADHIDTA ISSFAWGTSH
PGTESMVAAL KGSEFDTGLD LELLQEIGLY FYAVRKKYHQ FESEFTAVDT RVQVNQVPGG
MISNLANQLK EQGALNRMNE VLAEIPRVRE DLGFPPLVTP TSQIVGTQAF FNVLAGERYK
TITNEVKLYL QGGYGKAPGV VNEQLRRQAI GSEEVIDVRP ADLLKPEMAK LRSDIGALAR
CEEDVLTFAM FPDIGRKFLE EREAGTLTPE VLLPIPEAGA VAAPGGEGVP TEFVIDVHGE
TYRVDITGVG VKAEGKRHFY LSIDGMPEEV VFEPLNEFVS GGGSKRKQAT DPGHVSTTMP
GNIVDVLVKE GDMVKAGQAV LITEAMKMET EVQAAIAGKV VAIHVAKGDR VTPGEILIEI
EG