| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5211 |
|---|
| Symbol | |
|---|
| ID | 5193911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5853315 |
|---|
| End bp | 5855423 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640589694 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_001270513 |
|---|
| Protein GI | 148550411 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.292904 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.353602 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGGTA TAGAAGCCTT GGCCGAACGG CTGTCGACCT ATCTTGGCCC CGAACAGGTC
AACCTGGTTC GGCGTGCCTA TTTCTACGCC GAACAGGCTC ACGATGGGCA ACGCCGCCGC
AGTGGCGAGC CCTACGTGAC CCACCCGCTG GCCGTGGCCA GCATCCTCGC CGACATGCAC
ATGGACCATC AGAGCCTGAT GGCGGCCATG CTGCACGATG TGATCGAAGA CACCGGCATC
GCCAAGGAAG CCCTCAGCCA GCAGTTTGGC GAGACCGTGG CCGAACTGGT CGATGGGGTC
AGCAAGCTGA CCCAGATGAA TTTCGAGACC AAGGCCGAGG CACAGGCGGA AAACTTCCAG
AAGATGGCCA TGGCCATGGC CCGCGATATC CGCGTGATCC TGGTCAAGTT GGCCGACCGC
CTGCACAACA TGCGCACCCT GGAAGTGCTG TCTGGCGAAA AACGCCGGCG CATCGCCAAG
GAAACCCTCG AGATCTACGC CCCCATCGCC AACCGCCTGG GGATGCACAC CGTGCGCGTG
GAGTTCGAAG ACCTTGGCTT CAAGGCCATG CACCCGATGC GCTCGTCGCT GATTCATCGT
GCAGTGAAGA GCGCACGCGG CAACCGCAAA GAAATCGTCG CCAAGATCGA GCACTCGCTG
GCCAACTGCC TGTCCGCCGA CGGCATCGAG GGCGAGGTCA GCGGTCGGCA GAAACACCTC
TATGGCATCT ACAAGAAGAT GCGCGGCAAG CGCCGTGCCT TCAACGAGAT CATGGACGTG
TATGCCTTCC GCATCATTGT CGACAAGGTT GACACCTGCT ACCGCGTGCT CGGCGCCGTG
CACAACCTGT ACAAGCCGCT GCCCGGACGC TTCAAGGATT ACATCGCGAT CCCCAAGGCC
AACGGCTACC AGTCGTTGCA CACGACCCTG TTCGGCATGC ACGGCGTGCC CATCGAAATC
CAGATCCGCA CCCGCGAAAT GGAAGAGATG GCCAACAACG GCATCGCCGC CCACTGGCTG
TACAAGTCAA ACGACGACGA GCAGCCCAAG GGCAGCCACG CGCGTGCCCG CCAGTGGGTC
AAGGGTATCC TCGAACTGCA GCAACGTGCC GGCAACTCCC TGGAATTCAT CGAGAGCGTG
AAGATCGACC TTTTCCCGGA CGAGGTCTAC GTGTTCACGC CCAAAGGCCG GATCATGGAG
TTGCCCAAAG GCTCCACGGC CGTCGACTTC GCCTACGCGG TGCACACCGA CGTTGGCAAC
AGTTGCATCG CGTGCCGCAT CAACCGCCGC CTGGCGCCGC TGTCCGAACC GCTGCAAAGC
GGCTCGACAG TGGAAATCGT CAGCGCCCCG GGCGCTCGGC CAAACCCGGC CTGGCTCAAC
TTTGTGGTCT CAGGCAAGGC ACGCACGAAT ATCCGCCACG CGCTCAAGCA ACAGCGCCGT
TCCGAATCCA TCAGCCTGGG CGAGCGCCTG CTGAACAAGG TGCTCACTGG CTTTGACAGC
AGCCTGGAGA AAATCCCCCA GGAACGCATC GAGTCTATTC TCGCCGAGTA CCGCCTGGAG
CTGATAGAAG ACCTGCTCGA AGACATCGGC CTGGGCAACC GCATGGCCTA CGTGGTCGCG
CGCCGCCTGC TGTCGGCCGA AGGCGAACAG TTGCCGGCGC CAGAAGGCCC GCTGGCGATC
CGCGGTACCG AAGGCCTGGT GCTGAGCTAC GCCAAGTGCT GCACGCCGAT CCCGGGTGAC
CCGATTGTCG GCCACCTGTC GGCCGGCAAA GGCATGGTCG TGCACCTGGA AAACTGCCGC
AACATCAGTG AAATCCGCCA CAACCCCGAA AAGTGCGTGC AACTCTCCTG GGCCAAGGAC
ATCACTGGCG AGTTCAATGT CGAACTGCGT GTCGAACTGG AACACCAGCG GGGGCTGATC
GCCCTGCTGG CCAGCAGCGT CAACGCCGCC GACGGCAACA TTGAGAAGAT CAGCATGGAC
GAACGCGACG GCCGTATCAG CGTGGTCCAA CTGGTGGTCA GCGTGCACGA CCGCGTGCAC
CTGGCGCGTG TGATCAAGAA GCTGCGTACC CTGACCGGTG TGGTCCGCAT CACCCGCATG
CGTACGTAG
|
|---|
| Protein sequence | MPGIEALAER LSTYLGPEQV NLVRRAYFYA EQAHDGQRRR SGEPYVTHPL AVASILADMH
MDHQSLMAAM LHDVIEDTGI AKEALSQQFG ETVAELVDGV SKLTQMNFET KAEAQAENFQ
KMAMAMARDI RVILVKLADR LHNMRTLEVL SGEKRRRIAK ETLEIYAPIA NRLGMHTVRV
EFEDLGFKAM HPMRSSLIHR AVKSARGNRK EIVAKIEHSL ANCLSADGIE GEVSGRQKHL
YGIYKKMRGK RRAFNEIMDV YAFRIIVDKV DTCYRVLGAV HNLYKPLPGR FKDYIAIPKA
NGYQSLHTTL FGMHGVPIEI QIRTREMEEM ANNGIAAHWL YKSNDDEQPK GSHARARQWV
KGILELQQRA GNSLEFIESV KIDLFPDEVY VFTPKGRIME LPKGSTAVDF AYAVHTDVGN
SCIACRINRR LAPLSEPLQS GSTVEIVSAP GARPNPAWLN FVVSGKARTN IRHALKQQRR
SESISLGERL LNKVLTGFDS SLEKIPQERI ESILAEYRLE LIEDLLEDIG LGNRMAYVVA
RRLLSAEGEQ LPAPEGPLAI RGTEGLVLSY AKCCTPIPGD PIVGHLSAGK GMVVHLENCR
NISEIRHNPE KCVQLSWAKD ITGEFNVELR VELEHQRGLI ALLASSVNAA DGNIEKISMD
ERDGRISVVQ LVVSVHDRVH LARVIKKLRT LTGVVRITRM RT
|
|---|
| |