Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_5114 |
Symbol | |
ID | 5193450 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5745437 |
End bp | 5746396 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640589597 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001270416 |
Protein GI | 148550314 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGAT ACGCCCCTAG AATCTTCGCC ACTGCACTGA TCGCACTGCT CGCTGCAGCC GGCGGGCTGG GGTACTGGAA GTCGCTTCAC GACCAGTTGC CCGAAGGCCT GAGCATGGGC AACGGCCGCC TTGAAGCCAC CGAAGTGCAG ATCGCCAGCA AGATCCCCGG TCGCCTGGCC GAAGTACTGG TCGATGAAGG CGACAACGTG ACCCGTGGCC AGCTACTGGC ACGCATCGAC ACACGCACCA TGGAAGCCCA GCGCAGCCAG GCCGAAGCCG AAGTGCTGCG CGCCCGGGAA AACTACGCCG CCGCCCAGGC CACCGTGCAA CTGCGCCAGA GTGAACTGCT GTTGGCCAGC CAGGAGCTCA AGCGCGTACG CGAAATCTTC CAGCGCAAGT TCGCCAGCCA GCAGTTGCTC GACCAACAGC AGGCGCGCTT TGACACGGCC AACGCAGCAG TAGTCGCTGC CCGCGCCCAA CTGGCAGCGA TCAAGGCCGC CATTGGCGCC GCCGAAGCCC AAGTGGCGCA GCTCACCAGC GAAATCGACG ACAGCAGCCT GCGTGCGCCC ATCAACGGCA TCATCCAGCT GCGCCTGGCC GAACCCGGTG AAGTGCTGGG TGCCGGCGGC CGTGTGCTGA TGCTGATCGA CCCCAGCGAC CAGTACATGA ACCTGTACCT CCCGGCCTCT ACCAGCGGCC GGCTGACTGT AGGCGACCAG GCGCGCATCG TGCTCGACGC CCTGCCCGAG CGCGCGCTGC CGGCCAAGGT GGCCTTTGTC GCAGCCAAGG CCCAGTTCAC CCCCAAACAG GTGGAAACCC GCGACGAACG GCAAAAGCTG GTGTTCCGGG TCAAACTGCG CCTGAGCGAC CCAGGCGCCG TGCCGCAAGC CAAACCAGGC ATGCCAGGCG CCGGCTATGT ACGCACGGCT GAGGTGGACT GGCCGGCCAA CCTGCAATGA
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Protein sequence | MNRYAPRIFA TALIALLAAA GGLGYWKSLH DQLPEGLSMG NGRLEATEVQ IASKIPGRLA EVLVDEGDNV TRGQLLARID TRTMEAQRSQ AEAEVLRARE NYAAAQATVQ LRQSELLLAS QELKRVREIF QRKFASQQLL DQQQARFDTA NAAVVAARAQ LAAIKAAIGA AEAQVAQLTS EIDDSSLRAP INGIIQLRLA EPGEVLGAGG RVLMLIDPSD QYMNLYLPAS TSGRLTVGDQ ARIVLDALPE RALPAKVAFV AAKAQFTPKQ VETRDERQKL VFRVKLRLSD PGAVPQAKPG MPGAGYVRTA EVDWPANLQ
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