| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5046 |
|---|
| Symbol | |
|---|
| ID | 5192249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5671779 |
|---|
| End bp | 5674157 |
|---|
| Gene Length | 2379 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640589529 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001270348 |
|---|
| Protein GI | 148550246 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCT TTGAATCTGC TGTTGAAACA ATGCATGTCC TCACTTGGCT TGATGGGGTT
GAGAAAGATC CTCTAGGTTA TTACAAGGTA GAGTTCGCTG ATAATGATAG CGGGCACTTC
GCTTCGCTTA TGCTAAGCCC TTCCTATGTC TCCAGCTATG ATCTTGATGT GTGCTCGGAA
ACATTTGAGG TCGCTGAGAA CAAACTCATT CTGAGCATGA TGATCGATGG TTTGATCGAA
CAGGGTGAAG GCGCCTCGGG TACTAACTGG CGGCTTAAGT TGTTGGGCTG GTACAGATCG
TTATCTCATG AGGAGAAGCT GAAGCTGCCG ATCTTCGGTA ATCAGCTGAG CTTCAGGCGT
GGGCTTAAAC TTGTCCCAGA GCTAGCGTCC ATACAGTCAG CTATGAGTTA CCCAACTGTC
CGTAGGGCGT ATGACGATAT CAACAGCGAC CTTAAGAAGC TAGGTATCAT CTCAGATGCT
TATCAATCCG TGCAGGAGCG GTTTGACAGT AAAGAAAGAT TTGAGCCAGT TGAGAGTGCT
CTCATAGATT TCAAGCGTCT CAAGGCTCTT CCGCTTGACT GTACCGATGA CTACGAACGC
CCAGGCCCTG GCAGACCATT TCAAAGCCTT AAGCACGCCT TCGCATCTGC CGCACTTAAA
GCGGCGAGCG ACTCTGGGCT GAATAACTAT TTGGATGCTT TCAAATGGGT AGCTAAATTC
TTCGTTGAGG CTGGCCTGAC AGGGTGGGAA GCCATTGGAG ATATCTTAGA TCCCTTTATC
CTCCCTCGTT TTCGCTCGCA TCTGGAACAG AAGGTTATCA CGGGAGATCT GTCCCCAGGT
CATGCGAATA CTCTAATGAG TTCCTTTCGT AAGACATTGA GCACTGTCTC TAGCGTCAAA
GGCTATCAAG GATCAAGCTT CATTAACTCA CCTGGCTTTG ATGCTAACCG AGTAACGGAC
TTGTATCGTC CCTACTCTGT GAGTGTGCGT CAACGTATCT CAAAGACTGT AGACGAGGAC
ATTCTGCTGA ACAACCGTCT TGCACAGCCT TACGTCAAGA CGTGCCTTGG TGAGGATCCC
ATTGGCCCTG ATGGCCTATT GAAGCTTGGT CTGGGAACCC TCGAAAATGC CAGGTGGATC
TTCGAGAATA AATTTGGGTG CTCAAGTATC AGTTTTTCTA CTGACAGCAC TGATCCTTAT
GTAAAGGCGT ACTTGAATAT CGTAGGTCGG GCTGACATTG GGATCCGAGA TGTGATGAAG
AGCTGGGGAG TTCATCATAT TATTGATGGC GCCGTAATGA CCCCATATAT CGTAAAATTA
GCGCAGATTA CGGGCCTCAA CGCTGATTCT CTGAAGTTGA TGAATCTTAC TGACTACGTA
GAAGAGCATG AGCTGACTCT TGGGCCATGC CTACGATATT GGAAGGAACG CTCGGGCGGC
GCGAAGGTTA TGCCCCTCGA CTTGTTCGAT GCAGAGATCA CATGGCTCAC CACTGCTCAA
TCCAAAGAAG TGGCGAAAAT CTTCAATGAT GTGCAGTTCT TGACTGCTGA CATTAGGAAA
AATGCGCCTG TGGAAGTTCA AGAGAGGCTG TTTATCTGGG AGTCTAGTGC GCCTAAGAAC
TACCGAAAAA TCATGTCTCT TGCCACCGCT AAAGACGGAA TTATGTCTGA GCTTTTTCGA
AGCTACTCGA AGCGTGCCTG TCTCTTGGAT GACTCAGGGC AACCGCTGAG CCTGTCAGCG
TCACGCCTGC GCCCAAGCTT CATCAGTGAG CTGGTGGAGC GGGATGTCAC GATTCGGGAG
ATCCAGATCA TCCTGGGTCA CAAGCATATC GAGACGACCA TGGCGTACCT TGATCGTATG
GATTTCAACG CCATGGCCCG CGCCAAGCTT ACTGTCGCTT TAAACCAGAT TCACGAGTCG
GGTATGGAGC CAGAACAGCA CAAGCATCAA GTTGCTCCGG AGAATAGCGT TGTACTCATT
GAGGCTGTGA ACATCGATGA GCCTAGGGTC GTGTTCAAGA CTCCACTTGC TAGCTGCGTC
AACATCATGA ACCCACCCGA GTTCGTGAAG AAGCTCAGCT CCTACGTTCC AGGCAGCCCT
TGCTCGATGT ACAACATGTG CCTTGGCTGT GCCAATGTCC TGCTAACCAC ATCAGATCTG
CCCCAGTTGT TTGCCATGGA GCGCGACTAT AAAAAGCTCG CTGAGGTTTC CCGCGTAATG
GATACGCCCT ATGGGCGTGT CGTGAGGGAG AATTTGTCCC TGCTCAATAA GATCCTGAGT
GAGGAAACCT CAGACTTCAC GTCTGAGGAG CTGGCTGAAG GCCGTCGACT GGCCGAGTTT
GTTGATACCA CGATTTTGGT TGATGGGGTG GGCCTGTGA
|
|---|
| Protein sequence | MSIFESAVET MHVLTWLDGV EKDPLGYYKV EFADNDSGHF ASLMLSPSYV SSYDLDVCSE
TFEVAENKLI LSMMIDGLIE QGEGASGTNW RLKLLGWYRS LSHEEKLKLP IFGNQLSFRR
GLKLVPELAS IQSAMSYPTV RRAYDDINSD LKKLGIISDA YQSVQERFDS KERFEPVESA
LIDFKRLKAL PLDCTDDYER PGPGRPFQSL KHAFASAALK AASDSGLNNY LDAFKWVAKF
FVEAGLTGWE AIGDILDPFI LPRFRSHLEQ KVITGDLSPG HANTLMSSFR KTLSTVSSVK
GYQGSSFINS PGFDANRVTD LYRPYSVSVR QRISKTVDED ILLNNRLAQP YVKTCLGEDP
IGPDGLLKLG LGTLENARWI FENKFGCSSI SFSTDSTDPY VKAYLNIVGR ADIGIRDVMK
SWGVHHIIDG AVMTPYIVKL AQITGLNADS LKLMNLTDYV EEHELTLGPC LRYWKERSGG
AKVMPLDLFD AEITWLTTAQ SKEVAKIFND VQFLTADIRK NAPVEVQERL FIWESSAPKN
YRKIMSLATA KDGIMSELFR SYSKRACLLD DSGQPLSLSA SRLRPSFISE LVERDVTIRE
IQIILGHKHI ETTMAYLDRM DFNAMARAKL TVALNQIHES GMEPEQHKHQ VAPENSVVLI
EAVNIDEPRV VFKTPLASCV NIMNPPEFVK KLSSYVPGSP CSMYNMCLGC ANVLLTTSDL
PQLFAMERDY KKLAEVSRVM DTPYGRVVRE NLSLLNKILS EETSDFTSEE LAEGRRLAEF
VDTTILVDGV GL
|
|---|
| |