| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5034 |
|---|
| Symbol | |
|---|
| ID | 5191336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5661301 |
|---|
| End bp | 5663019 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640589518 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001270337 |
|---|
| Protein GI | 148550235 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4938] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00838553 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATTA ATAAAATATT GCTACAGCTT TATAAAAGAG TTGTGAGAGC CGAAATAAAT
TTAGGAACAG TGAATGTTCT TGTTGGCGGT AATAACGCAG GAAAAAGCAG CGTTCTCCAA
GGGATACACT TCTCAATTAG TGCCGCTGTT GCTGCTCGCC AACAGCAGCA AAAGACCTTT
GCAACAGAAT TATTGCAGTA TAACCCAACA CCTGATTTTA GTGTTTTGAG GAATGGCTCC
CCTTATCTTA ATCACACAGG AACCGGCGAG AGCAACTTAA CTCTTTACTC AAATATAACC
ACCACCAAAG AAGATGGAGA GCAAGTTCAA GAGGAAATAT CGTACAACAT AAAAATCAGC
AAAGGCAGGA ACCACGGGAA CATTGCTTGC AACAGGGAAG GCGATTACGA CAGAATCGGA
AGCATCGTCA CAAGTTCCGC CGATCTCTTT AGTGTATATG TGCCAGGACT AGCTGGTATC
TCGCAATTCG AAGAGTTGCG AGCAAGAGCT ATTGTGCGAC GAGGTGTGGC AAGCGGCGAT
GCCAACCTAT ATTTACGAAA CATTATTTAC TATATTCATG CCGCTGGGGA GCTACAGATA
TTAAACGAAA GGCTTGCGAC AATTTTCCCA GGAACTTTAA TTGAGGTTGA GTTTGATGAG
CAGCGCGACC ATCGGATTAA GGTGTACGCC GTCCATGGCG GTACTCGTAA TCTGATCGAG
CTTTGCGGCA CGGGACTTCT TCAGGTACTG CAAATTTACT CTTACATAAC CTACTTCAAG
CCAAAGTTAC TATTACTTGA CGAGCCTGAC TCCCATCTTC ACCCCAACAA TCAAATAGCC
TTATGCAACG CAATATCCAA TATTGCTGAA AGCACCAGTA CGCAAGTTTT ACTGTCCACC
CATAGTCGGC ACATGATGGA TGCACTCTCC GATGACGCGA ACTTCGTCTG GATGAGAGAC
GGAGAAATTC AAGAGCAGGG AAACAATCTT GACAAATTAC CAATGCTTCT TGATCTGGGA
GCATTAGACG ATTTCGACAG ATTGAGAAAT AACGAAATCG ACTTGATTGT CCTCACCGAA
GATCGTAAAA CCCGTTACCT CGAAAGACTG CTCGAGCTAA ACGGTTTCAA AATGACGAAA
GTGCTAATTT ACAGCTATAA AACTTCGTCA AACCTTGAGT CAGCTTCACT TTTCACTGAC
TTCCTCAAAA GCGTTTCCCC TGGTATACAG GTAATGATCC ATCGAGACAG GGACTTCATG
ACCATAGAGG AAGCTGCAGG TATTGAAGCA CGTATAGAGA AGGAACAGGC GATTCCATTC
ATTACTGCAG GTAGCGACAT TGAGGCATAT TTCATTGAGC CTGCATTCCT AGCTTCAATG
GCCAATGTAG AGGATCCTAA TGACGTCGCC GCTTGGCTTG ACGCAATTGC GACCGAACAC
CACATCGACA TCCAGCATCA GTTTATTCGA AAGCGAGACG AAATATTTGA TCGCATCCAC
AAGCGAAACA GAGATGTAGC GCCTGAAACA TTACAACTGA TTGGCCGGGA CATCCCCCTC
TCCAGTGACA AAAGAAAGGG GAAGTTCATG ATAAAGCGAG TACGGGATGG TTTCAGAGAA
AAATTTGGGA TCTCTTACAA TGAGAACTTC CAAGATCATA TCCCTGCCTG TGCTACCTTA
CAAGGCATAG CGGAACGAAT TTGGCCTGCA GTGGCATGA
|
|---|
| Protein sequence | MRINKILLQL YKRVVRAEIN LGTVNVLVGG NNAGKSSVLQ GIHFSISAAV AARQQQQKTF
ATELLQYNPT PDFSVLRNGS PYLNHTGTGE SNLTLYSNIT TTKEDGEQVQ EEISYNIKIS
KGRNHGNIAC NREGDYDRIG SIVTSSADLF SVYVPGLAGI SQFEELRARA IVRRGVASGD
ANLYLRNIIY YIHAAGELQI LNERLATIFP GTLIEVEFDE QRDHRIKVYA VHGGTRNLIE
LCGTGLLQVL QIYSYITYFK PKLLLLDEPD SHLHPNNQIA LCNAISNIAE STSTQVLLST
HSRHMMDALS DDANFVWMRD GEIQEQGNNL DKLPMLLDLG ALDDFDRLRN NEIDLIVLTE
DRKTRYLERL LELNGFKMTK VLIYSYKTSS NLESASLFTD FLKSVSPGIQ VMIHRDRDFM
TIEEAAGIEA RIEKEQAIPF ITAGSDIEAY FIEPAFLASM ANVEDPNDVA AWLDAIATEH
HIDIQHQFIR KRDEIFDRIH KRNRDVAPET LQLIGRDIPL SSDKRKGKFM IKRVRDGFRE
KFGISYNENF QDHIPACATL QGIAERIWPA VA
|
|---|
| |