Gene Pput_5012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_5012 
Symbol 
ID5192919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5634760 
End bp5637012 
Gene Length2253 bp 
Protein Length750 aa 
Translation table11 
GC content65% 
IMG OID640589497 
Productheavy metal translocating P-type ATPase 
Protein accessionYP_001270316 
Protein GI148550214 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2217] Cation transport ATPase 
TIGRFAM ID[TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.530784 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCAGC CTGTCAGCCA CGAACACAAG CATCCGCACG ATCACGCTCA TGGTGATGAC 
GACCATGGCC ATGCTGCCCA CGGCCACAGC TGCTGCGGCG CCAAAGCCGC GCCGCCGCTG
GTGCAACTGA GCGAAACGGC CAGTGCCCAG GCACAACTCA GTCGTTTCCG CATCGATGCC
ATGGACTGCC CCACCGAGCA GAACCTGATT CAGGACAAAC TGAGCAAGCT GGCCGGTATC
GAACAGCTGG AATTCAACCT GATCAACCGC GTGCTTGGCG TGCGCCACAC CTTGGACGGC
ACCGCCGATA TCGAGCGGGC TATCGACAGC CTGGGCATGA AGGCCGAGCC GATTGCCGCC
CAGGACGACG GCAGCGCCAG CGTGCCCCAA CCGGCCAAGG CCCGCTGGTG GCCACTGGCA
TTGTCGGGCG TCGCCGCGAT CGCCGCCGAA ATCGTGCACT TTGCTGCACT GGCCCCTGAG
TGGGTGGTAG CGGGACTGGC GCTTGCCGCG ATCCTCGGTT GCGGCCTGGG TACCTACAAG
AAGGGCTGGA TTGCCCTGAA AAACCGTAAC CTCAACATCA ATGCGCTGAT GAGTATCGCC
GTGACGGGGG CCGTATTGAT CGGCCAGTGG CCGGAGGCGG CGATGGTCAT GGTGCTCTTC
ACCGTTGCCG AACTGATCGA AGCGCGCTCG CTGGACCGTG CGCGCAATGC CATCGGCGGG
TTGATGCAGC TGACCCCGGA CGTGGCTACG GTGCAGCAGG CCGATGGCCA GTGGCGCGAG
CTGGAAGTGC GTGAGGTGGC CATCGGCGCA CTGGTTCGGG TGCGCCCCGG TGAGCGCATC
GGCCTGGACG GTGAAGTGAC CAGCGGGCAA TCCAGCGTCG ATCAGGCGCC GATTACCGGC
GAAAGCCTGC CTGTGGAGAA GGGGGTGGGC GACAAGCTGT TCGCTGGCAC CATCAACCAG
GCGGGGGCGC TGGAGTTTCG CGTCACCGCC GCTGCCGGGC AGTCGACCCT GGCGCGGATC
ATCAAGGCTG TGGAGGAAGC GCAGGGCGCG CGGGCGCCTA CCCAACGCTT CGTCGACCGT
TTCTCGCGTA TCTACACCCC GGTGGTATTC GCCATTGCCC TGGCCGTGGC GCTGTTGCCC
CCGCTGTTCA TGGCTGGCGC CTGGTTCGAC TGGGTTTACC GCGCCTTGGT GCTGCTGGTG
GTGGCCTGCC CCTGCGCGCT GGTGATCTCG ACCCCGGTGA CCATCGTCAG TGGCCTGGCC
GCCGCTGCGC GCAAAGGCAT CCTGATCAAG GGTGGCGTGT ACCTGGAGGG TGGCCGCCAC
CTGGATTTCC TGGCCCTGGA CAAGACCGGC ACCATTACCC ATGGCAAGCC GGTGCAGACT
GACGCCAAGG TGCTGGCGCC GCTGTTCGAA GACCGTGCGC AAGCCTTGGC GGCCAGCCTG
GGCGAGCGTT CGGACCACCC GGTGTCCCGC GCCATTGCCG AGTTCGGCAA GCAGCAAGGC
CTGGCCTTGA GCGAGGTCAG TGACTTCGCC GCCCTGGCCG GGCGTGGCGT GCGTGGTGTC
ATCGCCGGTG AGGTCTACCA CTTGGGCAAC CACCGCCTGG TCGAGGAACT GGGGCTGTGT
TCGCCAGCGC TGGAGGCCCA GCTTGATGCG CTGGAGCGCC AGGGCAAGAC CGTGGTCCTG
CTGCTCGACC GATCCGGCCC TCTGGCACTG TTCGCCGTGG CCGACACGGT CAAGGACAGC
AGCCGTCAGG CGATCGCCGA ATTGCATCAA CTGGGTATCA AGACTGTCAT GCTGACCGGT
GACAATCCGC ATACTGCGCA GGCCATTGCC GCCGTGGTGG GGATCGACCG CGCCGAGGGC
AACCTGTTGC CGGCCGACAA GCTGAAAACC ATTGAGGCGT TGTACGCCCA AGGCCATCGG
GTAGGCATGG TCGGTGACGG CATCAACGAC GCCCCGGCGC TGGCCCGCGC CGAAATCGGT
TTTGCCATGG CTGCTGCCGG CACCGACACC GCCATCGAGA CGGCTGATGT GGCGCTGATG
GACGATGACT TGCGCAAAAT CCCGGCCTTC GTCAGGCTGT CGCGCCAAAG TGCGGCGATC
CTCATGCAGA ACATCGTTCT GGCGTTGGGC ATCAAGGCGA TATTTCTGGC GATCACCTTT
GCCGGCATGG CCACGATGTG GATGGCGGTG TTCGCTGATA TGGGCGTGAG CTTGCTGGTG
GTGTTCAACG GCTTGCGCCT TTTGCGCAAA TAG
 
Protein sequence
MNQPVSHEHK HPHDHAHGDD DHGHAAHGHS CCGAKAAPPL VQLSETASAQ AQLSRFRIDA 
MDCPTEQNLI QDKLSKLAGI EQLEFNLINR VLGVRHTLDG TADIERAIDS LGMKAEPIAA
QDDGSASVPQ PAKARWWPLA LSGVAAIAAE IVHFAALAPE WVVAGLALAA ILGCGLGTYK
KGWIALKNRN LNINALMSIA VTGAVLIGQW PEAAMVMVLF TVAELIEARS LDRARNAIGG
LMQLTPDVAT VQQADGQWRE LEVREVAIGA LVRVRPGERI GLDGEVTSGQ SSVDQAPITG
ESLPVEKGVG DKLFAGTINQ AGALEFRVTA AAGQSTLARI IKAVEEAQGA RAPTQRFVDR
FSRIYTPVVF AIALAVALLP PLFMAGAWFD WVYRALVLLV VACPCALVIS TPVTIVSGLA
AAARKGILIK GGVYLEGGRH LDFLALDKTG TITHGKPVQT DAKVLAPLFE DRAQALAASL
GERSDHPVSR AIAEFGKQQG LALSEVSDFA ALAGRGVRGV IAGEVYHLGN HRLVEELGLC
SPALEAQLDA LERQGKTVVL LLDRSGPLAL FAVADTVKDS SRQAIAELHQ LGIKTVMLTG
DNPHTAQAIA AVVGIDRAEG NLLPADKLKT IEALYAQGHR VGMVGDGIND APALARAEIG
FAMAAAGTDT AIETADVALM DDDLRKIPAF VRLSRQSAAI LMQNIVLALG IKAIFLAITF
AGMATMWMAV FADMGVSLLV VFNGLRLLRK