Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_5002 |
Symbol | |
ID | 5195013 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5621304 |
End bp | 5623145 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640589487 |
Product | dihydroxy-acid dehydratase |
Protein accession | YP_001270306 |
Protein GI | 148550204 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism |
COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.138711 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGATT ATCGTTCCAA GACTTCCACC CAAGGCCGCA ACATGGCCGG CGCCCGTGCC CTGTGGCGCG CCACCGGGAT GAAGGACGAA GACTTCAAGA AACCGATCAT CGCCATCGCC AACTCGTTCA CCCAGTTCGT TCCGGGCCAC GTGCACCTGA AGGACCTGGG CCAGCTGGTG GCTCGCGAAA TCGAACGCGC CGGTGGCGTG GCCAAGGAAT TCAACACCAT CGCGGTTGAT GACGGCATCG CCATGGGCCA CGACGGCATG CTGTACTCGC TGCCAAGCCG CGAAATCATT GCCGACGCGG TGGAGTACAT GGTCAATGCG CACTGCGCTG ACGCCATCGT CTGCATCTCC AACTGCGACA AGATCACCCC CGGCATGCTG ATGGCCGCCC TGCGCCTGAA CATCCCGGTG ATCTTCGTTT CCGGCGGCCC GATGGAAGCC GGCAAGACCA AGCTGGCCAG CCACGGCCTG GACCTGGTCG ATGCCATGGT CATCGCGGCC GACTCCACGG CCTCCGACGA AAAAGTCGCC GAATACGAGC GCAGCGCCTG CCCGACCTGC GGTTCGTGCT CCGGCATGTT CACCGCCAAC TCGATGAACT GCCTGACCGA AGCCCTGGGC CTGGCCCTGC CGGGCAACGG TTCGACCCTG GCCACCCACT CCGACCGCGA GCAGCTGTTC CTCACGGCCG GCCGCACCAT CGTCGAGCTG TGCAAGCGCT ACTACGGCGA GAATGACGAG TCGGTCCTGC CACGCAGCAT CGCCAACTTC AAAGCGTTCG AAAACGCCAT GATGCTGGAC ATCGCCATGG GCGGCTCGAC CAACACCATC CTGCACCTGC TGGCCGCAGC ACAAGAAGGT GAAGTGGCGT TCGACCTGCG CGACATCGAC CGCCTGTCAC GCAAAGTGCC GCAGCTGTGC AAAGTGGCGC CAAACATCCA GAATTACCAC ATGGAAGACG TCCACCGCGC CGGCGGCATC TTCAGCATCC TCGGTTCGCT GGCCCGTGGC GGCCTGCTGC ACACCGACCT GCCGACCGTG CACAGCCGCA GCATGGAAGA AGCCATCGCC AAATGGGACA TCACCCAGAC CGATGACGAA GCGGTGCACA CCTTCTTCAA GGCCGGCCCG GCCGGTATCC CGACCCAGAC CGCATTCAGC CAGTCGACCC GTTGGGAAAC CCTCGACGAC GACCGTGAAA ACGGCTGCAT CCGCAGCTTC GAACACGCCT ACTCGCAAGA GGGCGGCCTG GCCGTGCTGT ACGGCAACAT CGCACTGGAT GGCTGCGTGG TCAAAACGGC CGGCGTGGAC GAATCGATCC ACGTGTTCGA GGGCACCGCG AAGATCTTCG AAAGCCAGGA CAGCGCCGTG CGCGGCATCC TCGCCGACGA GGTGAAAGCC GGCGACATCG TCATCATCCG CTACGAAGGC CCGAAAGGCG GCCCGGGCAT GCAAGAAATG CTCTACCCGA CCTCGTACCT CAAGTCCAAA GGCCTGGGCA AGGCCTGCGC CCTGCTCACC GACGGTCGCT TCTCGGGCGG TACCTCGGGC CTGTCGATCG GCCACGCCTC GCCAGAGGCC GCGGCGGGCG GTGCCATCGG CCTGGTGCGC GACGGCGACA AGGTACTGAT CGACATCCCT AACCGTTCGA TCAACCTGCT GGTCAGCGAT GAAGAGCTGG CGGAACGCCG TGTCGAGCAG GACAAGAAGG GCTGGAAGCC AGCCGAGGTC CGTCCCCGCA AGGTAACCAC CGCGCTCAAG GCCTATGCCC TGCTGGCCAC CAGTGCCGAC AAAGGCGCTG TGCGTAACAA GGCGATGCTG GAAGGCCTCT GA
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Protein sequence | MPDYRSKTST QGRNMAGARA LWRATGMKDE DFKKPIIAIA NSFTQFVPGH VHLKDLGQLV AREIERAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSREII ADAVEYMVNA HCADAIVCIS NCDKITPGML MAALRLNIPV IFVSGGPMEA GKTKLASHGL DLVDAMVIAA DSTASDEKVA EYERSACPTC GSCSGMFTAN SMNCLTEALG LALPGNGSTL ATHSDREQLF LTAGRTIVEL CKRYYGENDE SVLPRSIANF KAFENAMMLD IAMGGSTNTI LHLLAAAQEG EVAFDLRDID RLSRKVPQLC KVAPNIQNYH MEDVHRAGGI FSILGSLARG GLLHTDLPTV HSRSMEEAIA KWDITQTDDE AVHTFFKAGP AGIPTQTAFS QSTRWETLDD DRENGCIRSF EHAYSQEGGL AVLYGNIALD GCVVKTAGVD ESIHVFEGTA KIFESQDSAV RGILADEVKA GDIVIIRYEG PKGGPGMQEM LYPTSYLKSK GLGKACALLT DGRFSGGTSG LSIGHASPEA AAGGAIGLVR DGDKVLIDIP NRSINLLVSD EELAERRVEQ DKKGWKPAEV RPRKVTTALK AYALLATSAD KGAVRNKAML EGL
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