Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4996 |
Symbol | |
ID | 5192493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5615317 |
End bp | 5616915 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640589481 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001270300 |
Protein GI | 148550198 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGTCC CCGACCCGTT TCGCCAAGGC CTCGAACGCG GCTGGATCAC CCACGACGCC TCGCGCCTGG AGCACGACCT GTTTCTGGAG GCCGACATTG CCGTGATCGG CAGTGGTGCC GGCGGCGCCA CCAGCGCGCA GATGCTCAGC GCTGCCGGTT TCAAGGTACT GCTGATCGAA GAAGGCCCCC TGAAAACCAG TAGCGATTTC CACCTGCTGG AGAGTGAAGC CTACGCAAGC CTGTACCAGG AAGGCCTGGG ACGCATGAGC AAGGATGGCG CCATTACCAT CCTGCAGGGC CGCGCCGTGG GTGGCACCAC GCTGGTGAAC TGGACCTCAA GCTTTCGTAC CCCGCCGCAA ACCCTGGCGC ACTGGGCGTC GGTCCATGGT GTGAACGGTT TGGGCGAGGA TGAACTGCGC CCCTGGTTCG AGCGCATGGA GCAGGAACTG GGCATCAGCC CTTGGGCCTT GCCGCCGAAT GCCAACAACG AGGTGCTGCG CCGGGGCTGC GAACAGCTGG GTTACCGCTG GGGGGTGATC CCGCGCAATG TGCGCGGCTG CTGGAACCTG GGCTACTGCG GCATGGGCTG CCCGGTGAAT GCCAAACAAT CGATGCTGGT GACCCGTATA CCTGCCACCC TCGAGCAAGG CGGCGAACTG CTGTACCTGG CGCGGGCCGA GCGCTTCACC CACAACGGCG AACGCATTCA GAGCCTGACA TGCCAGGCCC TGGACGCCCA GGGCATACAC CCTACTGGCC GGCAGGTCAG CGTGCGGGCA CGTCATTACC TCCTGGCCGG TGGCGGTATC AACAGCCCGG CCCTGCTGCT GCGCTCTGCC GCGCCCGACC CGCATGGTCG CCTGGGCAAG CGAACCTTCC TGCACCTGGT CAACTTCAGT GCGGCACGCT TCAGCGAGCG TATCGACCCC TACCATGGCG CCCCGCAATC GATCTACAGC GATCACTTTC AGTGGCAAGG CGGCGTAGAC GGCCCGGCTG GCTACAAGCT GGAAGTACCG CCGCTGCATC CGGCCCTGGC CAGCACCCTG CTGGGCGGGC ACGGCCACGA GAGTGCCCAG CGCATGGCCG AGCTGCCCCA TACCCATGTG ATGCTGGCGC TGCTACGCGA TGGTTTTCAC CCCGAAAGCC AGGGCGGGGC CGTGGAACTG CGCGGCGATG GTTCACCCGT GCTCGATTAC CCGGTCACCG ACTACCTGCG GGATGGCTTG CGGCGCGCCT ACCGCAGCAT GGCGCACATA CAGTTCGCCG CTGGCGCCAC CCAGGTAACC CCAGTGCACA GCGACGCCAG CGCCGCCTCT CGCCTGGAAC AGGCCCTGAC CATGATCGAC AAACTGCGCC TGGAGCCCTT CCGCACGCGC TTGGGCAGTG CCCATGTGAT GGGCGGCTGC GCCCTCGGCG AAGATCCGCG TCAGGCGGTG TGCGACAGCC TGGGGCGCCA TCACCAGCTG GAAAACCTGT CGATTCACGA CGGCTCGCTG TTCCCCACCA GCATCGGCGC CAACCCGCAA TTATCGGTGT ATGCCATCAG CGCCAGGCTC AGCGAAGCAC TGGTCAGCCG CCTGGCACAC AGCGCATGA
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Protein sequence | MPVPDPFRQG LERGWITHDA SRLEHDLFLE ADIAVIGSGA GGATSAQMLS AAGFKVLLIE EGPLKTSSDF HLLESEAYAS LYQEGLGRMS KDGAITILQG RAVGGTTLVN WTSSFRTPPQ TLAHWASVHG VNGLGEDELR PWFERMEQEL GISPWALPPN ANNEVLRRGC EQLGYRWGVI PRNVRGCWNL GYCGMGCPVN AKQSMLVTRI PATLEQGGEL LYLARAERFT HNGERIQSLT CQALDAQGIH PTGRQVSVRA RHYLLAGGGI NSPALLLRSA APDPHGRLGK RTFLHLVNFS AARFSERIDP YHGAPQSIYS DHFQWQGGVD GPAGYKLEVP PLHPALASTL LGGHGHESAQ RMAELPHTHV MLALLRDGFH PESQGGAVEL RGDGSPVLDY PVTDYLRDGL RRAYRSMAHI QFAAGATQVT PVHSDASAAS RLEQALTMID KLRLEPFRTR LGSAHVMGGC ALGEDPRQAV CDSLGRHHQL ENLSIHDGSL FPTSIGANPQ LSVYAISARL SEALVSRLAH SA
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