| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4937 |
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| Symbol | |
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| ID | 5194007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5546106 |
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| End bp | 5547803 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640589422 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001270241 |
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| Protein GI | 148550139 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCAAG AATTCGATTA CATCATCGTC GGTGCCGGCT CGGCCGGTAA CACCCTGGCG
ACCCGCCTGA CCGAAGACGC CGGCGTCACC GTATTGCTGC TGGAAGCCGG TGGCCCCGAC
TACCGCTTCG ACTTCCGCAC CCAGATGCCA GCCGCCCTGG CCTTCCCGCT GCAAGGCCGC
CGCTACAACT GGGCCTACGA GACCGACCCG GAACCTTACA TGGACGGCCG CCGTATGGAA
TGTGGCCGTG GCAAGGGCCT GGGTGGCTCG TCGCTGATCA ACGGCATGTG CTACATCCGC
GGCAACGCCA TGGACTTCGA CGGCTGGGCA GAACTGCCAG GCCTGGAAGA CTGGACCTAC
CTCGACTGCC TGCCGTACTT CCGCAAAGCC GAAACCCGTG ATATCGGCCC TAACGACTAC
CACGGTGGTG ACGGCCCGGT CAGTGTCGCC ACGCCAAAGG CTGGCAACAA CCCGCTGTTC
CACGCCATGG TTGAAGCGGG TGTGCAAGCC GGTTACCCGC GTACCGAAGA CCTCAACGGC
TACCAACAGG AAGGCTTCGG CCCGATGGAC CGTTCGGTGA CCAAGAACGG CCGCCGCTCC
AGCACCGCCC GTGGCTACCT GGACCAGGCC AAGAAACGCC CGAACCTGAC CATCGTCACC
CACGCCCTGA CCGACCGCGT GCTGTTCGAC GGCAAGCGCG CCGTAGGCGT AACCTACCTG
GTCGGCGACA GCGAAGAACG CGTGGAAGCC CGCGCCCGCA AGGAAGTGAT CGTCAGCTCT
GGCGCCATCG CTTCGCCGCA GCTGCTGCAG CGCTCCGGCG TCGGCCCGCG CGCCCTGCTG
GAAAGCCTCG ACATCCCGGT TGTGCACGAC CTTCCGGGCG TTGGTGAAAA CCTTCAGGAC
CACCTGGAAC TGTACCTGCA GTACGCCTGC ACCCAGCCGG TATCGCTGTA CCCATCGCTG
CTGTGGTGGA ACCAGCCGGC CATCGGTGCC GAGTGGTTGT TCAATGGCAC CGGCATCGGC
GCCAGCAACC AGTTCGAGGC CGGTGGTTTC ATTCGTACCC GCCCTGAGTT CAAGTGGCCG
AACATCCAGT ACCACTTCCT GCCGGTTGCG ATTAACTACA ACGGCTCCAA TGGCGTGAAG
GAACATGGCT TCCAGGCGCA CATGGGCTCC ATGCGCTCGC CTGCCCGTGG CCGCATCCAG
GCCAAGTCGA AAGACCCGCG CCAGCACCCG AGCATCCTGT TCAACTACAT GTCCACCGAG
CAGGACTGGC AGGAATTCCG TGACGGCATT CGCCTGACCC GTGAAATCAT GGCCCAGCCG
GCGCTGGACC CGTACCGTGG CCGCGAAATC AGCCCGGGCG CCCACGTGCA AACCGACGAA
GAACTGGACA AGTTCATCCG CGAGCACGCC GAAACTGCCT TCCACCCGTC CTGCTCGTGC
AAGATGGGCA CCGACGACAT GGCGGTGGTC GACGGCGAAG GCCGCGTGCA CGGCATGAAG
GGCCTGCGCG TGGTCGATGC CTCGATCATG CCGCTGATCA TCACCGGCAA CCTCAACGCC
ACCACGATCA TGATCGCCGA GAAGATTTCG GACAAGATCC GTGGCCGCAA GCCACTGCCG
CGCAGCACCG CCAAGTACTA CGTGGCGGGC GATGCGCCAG TGAAAGGCAA GCCGATGCGT
GAAGTGAAGC AGGGCTGA
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| Protein sequence | MSQEFDYIIV GAGSAGNTLA TRLTEDAGVT VLLLEAGGPD YRFDFRTQMP AALAFPLQGR
RYNWAYETDP EPYMDGRRME CGRGKGLGGS SLINGMCYIR GNAMDFDGWA ELPGLEDWTY
LDCLPYFRKA ETRDIGPNDY HGGDGPVSVA TPKAGNNPLF HAMVEAGVQA GYPRTEDLNG
YQQEGFGPMD RSVTKNGRRS STARGYLDQA KKRPNLTIVT HALTDRVLFD GKRAVGVTYL
VGDSEERVEA RARKEVIVSS GAIASPQLLQ RSGVGPRALL ESLDIPVVHD LPGVGENLQD
HLELYLQYAC TQPVSLYPSL LWWNQPAIGA EWLFNGTGIG ASNQFEAGGF IRTRPEFKWP
NIQYHFLPVA INYNGSNGVK EHGFQAHMGS MRSPARGRIQ AKSKDPRQHP SILFNYMSTE
QDWQEFRDGI RLTREIMAQP ALDPYRGREI SPGAHVQTDE ELDKFIREHA ETAFHPSCSC
KMGTDDMAVV DGEGRVHGMK GLRVVDASIM PLIITGNLNA TTIMIAEKIS DKIRGRKPLP
RSTAKYYVAG DAPVKGKPMR EVKQG
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