Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4863 |
Symbol | |
ID | 5194130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5457477 |
End bp | 5459537 |
Gene Length | 2061 bp |
Protein Length | 686 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640589348 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001270167 |
Protein GI | 148550065 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0070905 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | GTGAACAAGC CTGCCACCCC CGTCACTGCC ACCACCGTGA GCCCACGTAC CCGCAGCATC GCGCAGATCA CCGTGCTGTT CCTGATCCTG ATCCTTTCGA TCATCTTGCT GTTCGCCAAC TTTGCTTACC TGAATACCCA ATCCAACTAC GACAAGCAGT ACATCGGCCA TGCCGGCGAG CTGCGCGTGC TGTCGCAGCG TATCGCCAAG AACGCCACCG AGGCGGCCAC CGGCAAGGCC CTGGCTTTCA AGCTGCTGTC GGATGCACGC AATGATTTCG AACGACGCTG GGGCTACCTG CGCCAGGGTG ACAGGTCCAC TGGCCTGCCG CCTGCGCCAC CTTCGGTGCG TGACGAGATG GAATCGGTAC GCCGCGACTG GGAAAACCTG CGCAAGAACA CCGACATCAT CCTGGCCAGC GAGCAGACCG TGCTGTCGCT GCACCAGGTG GCAGCGACCC TGGCCGAGAC CGTGCCGCAG TTGCAGGTGG AATACGAAAA AGTGGTCGAG ATCCTGCTGC AGAGCGGTGC CCCGGCCAAT CAGGTTGCGG TGGCCCAGCG CCAGCTGTTG CTGGCCGAAC GTATCCTTGG CTCGGTCAAC ACCGTGCTGG CCGGTGACGA CAGCGCCGCC CAGGCGGCCG ATGCCTTCGG CCGTGACGCC GGGCGCTTTG GCCAGGTGCT GGAGGGCATG CTCAATGGCA ATGCGACAAT CCAGATAACC CGCGTCGAGG ACGCCGACGC GCGTGCGCGG CTGGCCGAAA TCGCCGAGTT GTTCCAGTTC GTTGCCGGTT CGGTGGATGA AATCCTCGAA ACCTCGCCCG AACTGTTCCG TGTGCGGGAG GCTGCGGGCA ACATCTTCAG CCTTTCGCAA ACCCTGCTCG ACGAAGCGTC GCACCTGGCG AACGGTTTCG AGAACCTGGC TGGCGGGCGC ACCCTCGACA CCGTTGGCGG CTATGCCCTG GGGCTGCTGG CGCTGGCCTC GATCATCCTC ATCGGCCTGG TCATGGTGCG CACCACCAAC CGCCAATTGC GCGAGACCGC AGAAAAGAAC GAACGCAACC AGCAGGCCAT CATGCGCCTG CTCGACGAAA TAGAAGAGCT GGCAGATGGC GACCTGACGG TGACCGTATC GGTGACTGAA GATTTTACCG GCGCCATTGC CGACTCGATC AACTATTCCG TGGACCAGTT GCGCGACCTG GTCGCCACCA TCAACCACAG TGCAATGCAG GTCGCTGCCG CCGTGCAGGA CACGCAGAAC ACTGCGCGGC AACTGGCCAA GGCCTCCGAG CACCAGGCTG CACAGATCAG CGAGGCGTCC GAGGCGGTGG GCGACATGGT CGAGTCGATC GATCGGGTTT CGGCGCATGC TTACGAATCG GCCAAGGTGG CCGAGCGTTC GGTGGCCATC GCCAACAAGG GCAACGAGGT GGTGCACAAC ACCATCAATG GCATGGACAA CATTCGCGAG CAGATCCAGG ACACCGCCAA GCGGATCAAG CGTCTGGGCG AGTCCTCCCA GGAAATCGGC GACATCGTCA GCCTGATCGA CGACATTGCC GACCAGACCA ACATTCTTGC CCTGAACGCC GCTATCCAGG CCTCGCTGGC CGGTGAGGCC GGCCGCGGAT TTGCCGTGGT TGCCGACGAG GTGCAGCGCC TGGCTGAGCG CTCATCGTCT GCCACCCGCC AGATCGAGGC GCTGGTGCGT ACCATCCAGG CCGATACCAA CGAAGCGGTG ATCTCCATGG AGCAGACCAC CGCCGAAGTG GTGCGTGGCG CACGCCTGGC CCAGGATGCC GGGGTGGCGC TGGCCGAGAT CGAAGGGGTA TCGCAGAACC TCGCCGACCT TATCCACAGC ATCTCCGACG CTGCCCAGTT GCAGACCTCG TCGGCCGGGC AGATCTCCCA CACCATGGCG GTGATCCAGC AGATTACCGC GCAAACCTCT GCCGGCTCCG GTGCCACCGC CGACAGCATC CGCCACTTGG CCCGCATGGC CAGCGAGATG CGCCGTTCGG TGTCCGGTTT CACCCTGCCA CCACCGACCG AGCCGCGTTA A
|
Protein sequence | MNKPATPVTA TTVSPRTRSI AQITVLFLIL ILSIILLFAN FAYLNTQSNY DKQYIGHAGE LRVLSQRIAK NATEAATGKA LAFKLLSDAR NDFERRWGYL RQGDRSTGLP PAPPSVRDEM ESVRRDWENL RKNTDIILAS EQTVLSLHQV AATLAETVPQ LQVEYEKVVE ILLQSGAPAN QVAVAQRQLL LAERILGSVN TVLAGDDSAA QAADAFGRDA GRFGQVLEGM LNGNATIQIT RVEDADARAR LAEIAELFQF VAGSVDEILE TSPELFRVRE AAGNIFSLSQ TLLDEASHLA NGFENLAGGR TLDTVGGYAL GLLALASIIL IGLVMVRTTN RQLRETAEKN ERNQQAIMRL LDEIEELADG DLTVTVSVTE DFTGAIADSI NYSVDQLRDL VATINHSAMQ VAAAVQDTQN TARQLAKASE HQAAQISEAS EAVGDMVESI DRVSAHAYES AKVAERSVAI ANKGNEVVHN TINGMDNIRE QIQDTAKRIK RLGESSQEIG DIVSLIDDIA DQTNILALNA AIQASLAGEA GRGFAVVADE VQRLAERSSS ATRQIEALVR TIQADTNEAV ISMEQTTAEV VRGARLAQDA GVALAEIEGV SQNLADLIHS ISDAAQLQTS SAGQISHTMA VIQQITAQTS AGSGATADSI RHLARMASEM RRSVSGFTLP PPTEPR
|
| |