Gene Pput_4863 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4863 
Symbol 
ID5194130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5457477 
End bp5459537 
Gene Length2061 bp 
Protein Length686 aa 
Translation table11 
GC content64% 
IMG OID640589348 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001270167 
Protein GI148550065 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0070905 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGAACAAGC CTGCCACCCC CGTCACTGCC ACCACCGTGA GCCCACGTAC CCGCAGCATC 
GCGCAGATCA CCGTGCTGTT CCTGATCCTG ATCCTTTCGA TCATCTTGCT GTTCGCCAAC
TTTGCTTACC TGAATACCCA ATCCAACTAC GACAAGCAGT ACATCGGCCA TGCCGGCGAG
CTGCGCGTGC TGTCGCAGCG TATCGCCAAG AACGCCACCG AGGCGGCCAC CGGCAAGGCC
CTGGCTTTCA AGCTGCTGTC GGATGCACGC AATGATTTCG AACGACGCTG GGGCTACCTG
CGCCAGGGTG ACAGGTCCAC TGGCCTGCCG CCTGCGCCAC CTTCGGTGCG TGACGAGATG
GAATCGGTAC GCCGCGACTG GGAAAACCTG CGCAAGAACA CCGACATCAT CCTGGCCAGC
GAGCAGACCG TGCTGTCGCT GCACCAGGTG GCAGCGACCC TGGCCGAGAC CGTGCCGCAG
TTGCAGGTGG AATACGAAAA AGTGGTCGAG ATCCTGCTGC AGAGCGGTGC CCCGGCCAAT
CAGGTTGCGG TGGCCCAGCG CCAGCTGTTG CTGGCCGAAC GTATCCTTGG CTCGGTCAAC
ACCGTGCTGG CCGGTGACGA CAGCGCCGCC CAGGCGGCCG ATGCCTTCGG CCGTGACGCC
GGGCGCTTTG GCCAGGTGCT GGAGGGCATG CTCAATGGCA ATGCGACAAT CCAGATAACC
CGCGTCGAGG ACGCCGACGC GCGTGCGCGG CTGGCCGAAA TCGCCGAGTT GTTCCAGTTC
GTTGCCGGTT CGGTGGATGA AATCCTCGAA ACCTCGCCCG AACTGTTCCG TGTGCGGGAG
GCTGCGGGCA ACATCTTCAG CCTTTCGCAA ACCCTGCTCG ACGAAGCGTC GCACCTGGCG
AACGGTTTCG AGAACCTGGC TGGCGGGCGC ACCCTCGACA CCGTTGGCGG CTATGCCCTG
GGGCTGCTGG CGCTGGCCTC GATCATCCTC ATCGGCCTGG TCATGGTGCG CACCACCAAC
CGCCAATTGC GCGAGACCGC AGAAAAGAAC GAACGCAACC AGCAGGCCAT CATGCGCCTG
CTCGACGAAA TAGAAGAGCT GGCAGATGGC GACCTGACGG TGACCGTATC GGTGACTGAA
GATTTTACCG GCGCCATTGC CGACTCGATC AACTATTCCG TGGACCAGTT GCGCGACCTG
GTCGCCACCA TCAACCACAG TGCAATGCAG GTCGCTGCCG CCGTGCAGGA CACGCAGAAC
ACTGCGCGGC AACTGGCCAA GGCCTCCGAG CACCAGGCTG CACAGATCAG CGAGGCGTCC
GAGGCGGTGG GCGACATGGT CGAGTCGATC GATCGGGTTT CGGCGCATGC TTACGAATCG
GCCAAGGTGG CCGAGCGTTC GGTGGCCATC GCCAACAAGG GCAACGAGGT GGTGCACAAC
ACCATCAATG GCATGGACAA CATTCGCGAG CAGATCCAGG ACACCGCCAA GCGGATCAAG
CGTCTGGGCG AGTCCTCCCA GGAAATCGGC GACATCGTCA GCCTGATCGA CGACATTGCC
GACCAGACCA ACATTCTTGC CCTGAACGCC GCTATCCAGG CCTCGCTGGC CGGTGAGGCC
GGCCGCGGAT TTGCCGTGGT TGCCGACGAG GTGCAGCGCC TGGCTGAGCG CTCATCGTCT
GCCACCCGCC AGATCGAGGC GCTGGTGCGT ACCATCCAGG CCGATACCAA CGAAGCGGTG
ATCTCCATGG AGCAGACCAC CGCCGAAGTG GTGCGTGGCG CACGCCTGGC CCAGGATGCC
GGGGTGGCGC TGGCCGAGAT CGAAGGGGTA TCGCAGAACC TCGCCGACCT TATCCACAGC
ATCTCCGACG CTGCCCAGTT GCAGACCTCG TCGGCCGGGC AGATCTCCCA CACCATGGCG
GTGATCCAGC AGATTACCGC GCAAACCTCT GCCGGCTCCG GTGCCACCGC CGACAGCATC
CGCCACTTGG CCCGCATGGC CAGCGAGATG CGCCGTTCGG TGTCCGGTTT CACCCTGCCA
CCACCGACCG AGCCGCGTTA A
 
Protein sequence
MNKPATPVTA TTVSPRTRSI AQITVLFLIL ILSIILLFAN FAYLNTQSNY DKQYIGHAGE 
LRVLSQRIAK NATEAATGKA LAFKLLSDAR NDFERRWGYL RQGDRSTGLP PAPPSVRDEM
ESVRRDWENL RKNTDIILAS EQTVLSLHQV AATLAETVPQ LQVEYEKVVE ILLQSGAPAN
QVAVAQRQLL LAERILGSVN TVLAGDDSAA QAADAFGRDA GRFGQVLEGM LNGNATIQIT
RVEDADARAR LAEIAELFQF VAGSVDEILE TSPELFRVRE AAGNIFSLSQ TLLDEASHLA
NGFENLAGGR TLDTVGGYAL GLLALASIIL IGLVMVRTTN RQLRETAEKN ERNQQAIMRL
LDEIEELADG DLTVTVSVTE DFTGAIADSI NYSVDQLRDL VATINHSAMQ VAAAVQDTQN
TARQLAKASE HQAAQISEAS EAVGDMVESI DRVSAHAYES AKVAERSVAI ANKGNEVVHN
TINGMDNIRE QIQDTAKRIK RLGESSQEIG DIVSLIDDIA DQTNILALNA AIQASLAGEA
GRGFAVVADE VQRLAERSSS ATRQIEALVR TIQADTNEAV ISMEQTTAEV VRGARLAQDA
GVALAEIEGV SQNLADLIHS ISDAAQLQTS SAGQISHTMA VIQQITAQTS AGSGATADSI
RHLARMASEM RRSVSGFTLP PPTEPR