| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4860 |
|---|
| Symbol | |
|---|
| ID | 5191234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5451233 |
|---|
| End bp | 5451850 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640589345 |
|---|
| Product | hemolysin III family channel protein |
|---|
| Protein accession | YP_001270164 |
|---|
| Protein GI | 148550062 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.855318 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0154668 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATTACG GTGAACGCTT CAACGCCTGG ACCCACCTGG TCGGTGCCGT CCTCGCTGCT
ATTGGTGCCA TCTGGCTGAT CGTGGCCGCG GGCCTGCAAG GCGACCCGTG GAAGATCGTC
AGCTTCTCCA TCTACGGCGG CACGCTGCTG TTGCTGTACA GCATCTCCAC CCTGTACCAC
AGCACCCGTG GGCGGGCGAA AGTGATCATG CGCAAGCTCG ACCACCTGTC GATCTATCTG
CTGATTGCCG GCAGCTACAC GCCGTTTTGC CTGGTCAGCC TGCGCGGCCC GTGGGGATGG
AGCCTGTTCG GCGTGGTCTG GGGGCTGGCG ATCATCGGCA TGTTGCAAGA GATCAAGCCG
CGCTCCGAGG CGCGGATCCT CTCGATCATC ATCTACGCGG TGATGGGCTG GATCGTGCTG
GTGGCAGTCA AGCCACTGCT GAACTCGCTG GGCACTGCCG GCTTCGCCTG GCTGGCTGCC
GGCGGCGTGT TCTACACCGT CGGCATCATC TTCTTCGCCT TCGACAGCCG CTTCCGCCAC
TGGCATGGCA TCTGGCACCT GTTCGTGATC GCTGGCAGCC TGACGCACTT CGTGGCGGTG
TCGTTCTACG TGCGCTAG
|
|---|
| Protein sequence | MYYGERFNAW THLVGAVLAA IGAIWLIVAA GLQGDPWKIV SFSIYGGTLL LLYSISTLYH
STRGRAKVIM RKLDHLSIYL LIAGSYTPFC LVSLRGPWGW SLFGVVWGLA IIGMLQEIKP
RSEARILSII IYAVMGWIVL VAVKPLLNSL GTAGFAWLAA GGVFYTVGII FFAFDSRFRH
WHGIWHLFVI AGSLTHFVAV SFYVR
|
|---|
| |