| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4832 |
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| Symbol | |
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| ID | 5193346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5419123 |
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| End bp | 5421249 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640589317 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001270136 |
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| Protein GI | 148550034 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGGCG CTTACCCTCA ACAGCAGCCA CTGGATGGCA GCTCAGTTCT TCTGGTGGTA
GACGACTACC CCGAGAACCT CATCAGCATG CGGGCCTTGC TGGCCCGGCA GGATTGGCAA
GTATTGACGG CGAGCTCTGG GATAGAAGCC TTGAGCGCGT TGCTTGAGTA CGAAGTCGAC
CTGGTGTTGA TGGATGTACA GATGCCGGAA ATGGACGGCT TCGAAGTCGC CCGGCTGATG
CGCGGCAATC AGCGTACTCG ACTGACCCCG ATCATTTTCC TCACCGCCAA CGAACAGTCC
GACGCGGCCG TGCTCAAAGG CTACGCCAGC GGCGCCGTGG ACTACATGTT CAAACCGTTC
GACCCGCAAA TACTCAAACC CAAAGTCCAG GCGCTGCTCG ACCAGCAGCG CAACCGGCGC
ATGCTGCAGC AGCTCAGTCG CGAACTGGAG GCGGCCAGGG CATTCAATGC GTCCATCCTG
GAGAATGCCG CCGAAGGCAT TCTGGTGGTT GATGCCCATG GCATCATCAG TTTTGCCAAT
CCGGCCATTT CCCGTTTGCT GGCGGCACCG GTGCAACAAC TGCAGGGCAC CCCATTGCTC
GACGTTGTGC AACTGACCAG TACCAGCCTG TGGCGCGAGT CGGACTTCTA CAAGGCCTAC
CAGGGGCGGC AGATCTTCCG CGTACATGAT GCCCAACTGC GGACCCAAGG GGGGGAGCTT
GTGCCGGTGG CGCTGTCCTG TGCGCCGTTG CCGGCCGACC AACAGGCCAT GGTGGTGACT
GTGCTGGACA TGTCGGTGGT GCGTAACTTG CACCAGCAGC TGGAATACCA GGCCATTACC
GACCCGCTCA CCGGCCTGCT CAACCGCCGT GGTTTTTACC AGGCTGCTGA AGGTGCTCTG
TTGCGCAACG AGCGCTCGGA CAAGGCGCAG GCGCTGATGT ACATGGACCT GGATGGCTTC
AAGCGCATCA ACGACTCGCT CGGCCACGAC GCGGGCGACC GGGTGTTGCG CTGGGTGGCC
GAGCAGCTCA AGGACTGCCT GGGCAGTGAG GCCTTGCTGG CGCGTATGGG CGGGGATGAG
TTCACTGCAC TGTTCGACAG CTTGCCCTAC CCGGAGCAGG CCGGGCGTTA TGCCGAGCGG
TTGCTCGAGC GTGTTTCCAT CAGCCATGAG GTCGACGGGC TCGATGTATG CCTTGGGGTC
AGCATCGGCA TTGCCACCTA CCCGGACTGC GGCGCCAATG TTGAAGGCCT GCTGCGTTCG
GCCGATGCAG CGATGTACGC AGCCAAGCAA GCGGGGCGTC AGCAATACCG CTTCTACGAC
CAGGAACTCA ACGGACGGGC GCGCTCGCGA TTGATGCTCG AGGACAGCGT GCGCACGGCC
ATCGAGCAGC AGGACTTTAC CTTGGTGTAC CAGCCACAGG TCGCCTTCCA CGATGGCCGC
CTGCGTGGTT TCGAGGCCTT GCTGCGCTGG CAGCACCCCA GCGTTGGCGA TGTGCCGCCG
GGGCTGTTCA TCCCGTTGCT GGAAGAAGCG CGTCTGATCA ACCGCCTGGC CAGCTGGATC
TACCGCCAGG GGGCCGCCCA GCGGCAGGCC TGGTACGACA GGTTTCCGGC TGACCTTGTG
CTCGGCATCA GCCTGAGCCG CGCGCAGTTC GTCATGCCTG GCCTGGTCGA AGAACTGCAA
CGGGTCATCC AGCTTTACCA GCTTGTCCCG ACGCAGTTGG AGGTGGAAGT GGCGGAAACG
TCGCTGATGT ATAACATCGA CGCGGCCGTC AAACAGATAC ACCGCTTGCG TGACCTGGGT
GTGAGGGTGG CCCTGGATGA CTTTGGTGCG GGTGACTGTT CGTTGCGCAT GCTGCGCGAC
CTGCCTATCG ACACCCTCAA GCTTGACCGT CATCTGGTGG CACGTCTGCC CGATTCGGCG
GTAGATGCTG CGTTGGTTCG CAGCGTGATC GGCTTGTGCG CCGACTACCG TATCACGGTG
ATCGCCGAGG GGGTGGAGAC CCCGGCGCAG GCAGCCTGGC TCAAGGCCAA TGGTTGCGAA
TACGTTCAGG GTTTCCTGGT GGCTTATCCG ATGACCGCTG CTGACGCTAG CGGCTTCCCG
GCAATTTTCT CCTGGCCAGG GCCGTGA
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| Protein sequence | MDGAYPQQQP LDGSSVLLVV DDYPENLISM RALLARQDWQ VLTASSGIEA LSALLEYEVD
LVLMDVQMPE MDGFEVARLM RGNQRTRLTP IIFLTANEQS DAAVLKGYAS GAVDYMFKPF
DPQILKPKVQ ALLDQQRNRR MLQQLSRELE AARAFNASIL ENAAEGILVV DAHGIISFAN
PAISRLLAAP VQQLQGTPLL DVVQLTSTSL WRESDFYKAY QGRQIFRVHD AQLRTQGGEL
VPVALSCAPL PADQQAMVVT VLDMSVVRNL HQQLEYQAIT DPLTGLLNRR GFYQAAEGAL
LRNERSDKAQ ALMYMDLDGF KRINDSLGHD AGDRVLRWVA EQLKDCLGSE ALLARMGGDE
FTALFDSLPY PEQAGRYAER LLERVSISHE VDGLDVCLGV SIGIATYPDC GANVEGLLRS
ADAAMYAAKQ AGRQQYRFYD QELNGRARSR LMLEDSVRTA IEQQDFTLVY QPQVAFHDGR
LRGFEALLRW QHPSVGDVPP GLFIPLLEEA RLINRLASWI YRQGAAQRQA WYDRFPADLV
LGISLSRAQF VMPGLVEELQ RVIQLYQLVP TQLEVEVAET SLMYNIDAAV KQIHRLRDLG
VRVALDDFGA GDCSLRMLRD LPIDTLKLDR HLVARLPDSA VDAALVRSVI GLCADYRITV
IAEGVETPAQ AAWLKANGCE YVQGFLVAYP MTAADASGFP AIFSWPGP
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