Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4788 |
Symbol | |
ID | 5194901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5363352 |
End bp | 5365610 |
Gene Length | 2259 bp |
Protein Length | 752 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640589273 |
Product | DNA topoisomerase IV subunit A |
Protein accession | YP_001270092 |
Protein GI | 148549990 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.172576 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGACT CACTGGAACT CAGCCTGGAC GGCGTAGAAC GCCGCTCGCT GGCTGAATTC ACCGAACAGG CCTACCTCAA CTACTCCATG TACGTGATCA TGGACCGTGC CCTGCCGCAC ATCGGCGACG GCCTGAAGCC GGTGCAGCGC CGCATCGTCT ACGCCATGAG CGAGTTGGGG CTCGATGCCG ATGCCAAGCA CAAGAAGTCG GCACGTACCG TCGGTGACGT GCTTGGCAAG TTCCATCCCC ATGGCGATTC GGCCTGCTAC GAGGCCATGG TGCTGATGGC GCAGCCGTTC AGCTACCGCT ACACCTTGGT CGATGGCCAG GGCAACTGGG GTGCGCCGGA TGATCCGAAG TCGTTCGCCG CCATGCGCTA CACCGAGGCG CGGCTGTCAC GCTACGCTGA AGTGCTGCTC AGCGAAGTCG GCCAGGGCAC CGTGGACTGG GTGCCGAACT TCGACGGCAC GTTGCAGGAG CCGGCCGTGC TGCCTGCGCG CCTGCCCAAC ATCCTGCTCA ACGGTACCAC CGGTATCGCC GTGGGCATGG CCACCGACGT ACCGCCGCAC AACCTGCGAG AGGTGGCCAG TGCCTGTGTG CGACTGCTCG ATGAGCCCAA GGCAACCATT GAGCAGTTGT GCGAGCACAT CCAGGGGCCG GATTACCCGA CCGAGGCCGA GATCGTCACG CCGCGGGCTG AAATTCTCAA GATGTACGAA AGCGGCCGCG GCTCGATCCG CATGCGCGCC GTGTACCGCG TCGAGGATGG CGACATCGTC GTCACTGCGC TGCCGCACCA GGTCTCCGGG GCCAAAGTGC TGGAGCAGAT TGCCGCGCAG ATGCAGGCCA AGAAGCTGCC GATGGTCGCC GACCTGCGCG ACGAGTCGGA CCACGAGAAC CCATGCCGTA TTGTCATCAT CCCGCGATCC AACCGCGTCG ATGTCGACGA GCTGATGCAG CACCTGTTCG CTACCACCGA CCTGGAAAGC ACCTATCGGG TCAACGTGAA TATCATCGGC CTGGACGGCC GGCCGCAGTT GAAAAACCTG CGAACCATCT TGGTGGAGTG GCTGGAGTTC CGCACCAATA CCGTTCGTCG CCGCCTGCAG CACCGTTTGG ATAAGGTCGA GAAGCGCCTG CACCTGTTGG ACGGTTTGCT CACCGCATTC CTCAACCTGG ATGAAGTGAT CCACATCATC CGTACTGAGG AATACCCCAA GCAGGCCCTG ATCGAACGTT TCGAGCTGAC CGAGATCCAG GCTGACTACA TCCTCGAGAC CCGCCTGCGG CAGTTGGCGC GCCTGGAAGA GATGAAGATC CGCGGTGAGC AGGATGAGTT GCTGAAGGAG CAAGCCAAGC TGCAGGCCTT GCTGGGGAGC GAGGCCAAAC TGCGCAAGCT GGTGCGCAGC GAGCTGATCA AGGATGCCGA AACCTATGGC GATGATCGTC GCTCGCCGAT CGTAGCGCGT GCCGAAGCCA AGGCCCTGTC GGAAAACGAG CTGATGCCGA CCGAGCCCGT CACCGTGGTG CTGTCGGAGA AGGGCTGGGT GCGCTGCGCC AAGGGCCACG ATATTGACGC CACTGGCCTT TCCTACAAGG CCGGCGACGG TTTCAAGGCT GCTGCGGCTG GGCGTTCCAA CCAGTTTGCC GTGCTTATCG ATTCCACCGG TCGCAGCTAC TCGCTGGCGG CCCACAGCCT GCCATCGGCA CGTGGCCAGG GCGAGCCGCT GACTGGCCGT CTGACGCCGC CACCGGGGGC GACTTTCGAA TGTGTGTTGT TGCCTGACGA CGATGCGCTG TACGTGGTGG CTTCGGATGC CGGTTACGGT TTCGTGGTCA AGGGTGAAGA CCTGCAGGCC AAGAACAAGG CCGGCAAAGG CCTGCTCAGC TTGCCCAACG GGGCCAAGGT CATGACCCCG CGCCCAGTGG CTGATCGCGA GCAGGACTGG TTGGCGGCCG TGACCACCGA AGGCCGCTTG CTGGTGTTCA AGGTCAGCGA CTTGCCGCAG CTGGGTAAAG GCAAGGGCAA CAAGATCATT GGCGTGCCGG GTGACCGGGT GGCCAGCCGT GAAGAATTTG TTACCGATCT GGCCGTGATT CCCGAAGGCG GGACCCTTGT ATTGCAGGCC GGCAAGCGTA CCCTGTCTTT GAAGGCGGAC GACCTGGAGC ACTACAAGGG CGAGCGCGGT CGGCGCGGCA GCAAGCTGCC ACGCGGGTTC CAGCGCGTCG ATGGGTTGCA GGTGGAAGTG CCGACATAA
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Protein sequence | MSDSLELSLD GVERRSLAEF TEQAYLNYSM YVIMDRALPH IGDGLKPVQR RIVYAMSELG LDADAKHKKS ARTVGDVLGK FHPHGDSACY EAMVLMAQPF SYRYTLVDGQ GNWGAPDDPK SFAAMRYTEA RLSRYAEVLL SEVGQGTVDW VPNFDGTLQE PAVLPARLPN ILLNGTTGIA VGMATDVPPH NLREVASACV RLLDEPKATI EQLCEHIQGP DYPTEAEIVT PRAEILKMYE SGRGSIRMRA VYRVEDGDIV VTALPHQVSG AKVLEQIAAQ MQAKKLPMVA DLRDESDHEN PCRIVIIPRS NRVDVDELMQ HLFATTDLES TYRVNVNIIG LDGRPQLKNL RTILVEWLEF RTNTVRRRLQ HRLDKVEKRL HLLDGLLTAF LNLDEVIHII RTEEYPKQAL IERFELTEIQ ADYILETRLR QLARLEEMKI RGEQDELLKE QAKLQALLGS EAKLRKLVRS ELIKDAETYG DDRRSPIVAR AEAKALSENE LMPTEPVTVV LSEKGWVRCA KGHDIDATGL SYKAGDGFKA AAAGRSNQFA VLIDSTGRSY SLAAHSLPSA RGQGEPLTGR LTPPPGATFE CVLLPDDDAL YVVASDAGYG FVVKGEDLQA KNKAGKGLLS LPNGAKVMTP RPVADREQDW LAAVTTEGRL LVFKVSDLPQ LGKGKGNKII GVPGDRVASR EEFVTDLAVI PEGGTLVLQA GKRTLSLKAD DLEHYKGERG RRGSKLPRGF QRVDGLQVEV PT
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