| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4770 |
|---|
| Symbol | hfq |
|---|
| ID | 5194710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5343891 |
|---|
| End bp | 5344151 |
|---|
| Gene Length | 261 bp |
|---|
| Protein Length | 86 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640589255 |
|---|
| Product | RNA-binding protein Hfq |
|---|
| Protein accession | YP_001270074 |
|---|
| Protein GI | 148549972 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1923] Uncharacterized host factor I protein |
|---|
| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAG GGCATTCGCT ACAAGACCCT TACTTGAACA CCTTGAGAAA AGAAAAGGTC
CCGGTATCCA TTTACCTGGT CAACGGTATC AAACTGCAGG GCTCGATCGA ATCGTTCGAC
CAGTTCGTGG TATTGCTGAA GAACACCGTC AGCCAGATGG TCTACAAGCA CGCCATCTCG
ACCGTAGTTC CGGCCCGTCC GGTCCGCCTG CCAAGCCCGA CCGACAGCGA GCACGGCGAC
AGCGAGCCAG GCAACGCCTG A
|
|---|
| Protein sequence | MSKGHSLQDP YLNTLRKEKV PVSIYLVNGI KLQGSIESFD QFVVLLKNTV SQMVYKHAIS
TVVPARPVRL PSPTDSEHGD SEPGNA
|
|---|
| |