Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4735 |
Symbol | |
ID | 5191842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5301965 |
End bp | 5304031 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640589218 |
Product | AsmA family protein |
Protein accession | YP_001270039 |
Protein GI | 148549937 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00000197359 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACGCGTC CCGCCAGAAT CCTCGTCTGG ACCCTCGCCA GCCTGCTTAC CGTGCTGGCG ATCCTGGTGG TAGTGATTGC CACCTTCGAC TGGAACCGCG TCAAGCCACT GCTGAACGAG AAGGTCTCCG AAGCCTTGCA TCGGCCCTTC GCGATCAACG GCAACCTCGC CGTGCACTGG CGTACCGAGC CCGAAGAGGG CGGCTGGCGT GCCTGGGTGC CTTGGCCGCA CTTCATTGCC GAAGACCTGA CACTGGGCAA CCCCGAGTGG CTCAAGGAGC CGAAGATGGT CGGCCTTGAG CGCGTGGAGT TTCGCCTGGC GCCGCTGCCG CTGGTGTTCC AGCAGATCAG CATACCCCGC ATCAACCTCA CCAAGCCCAC TGCCAGCCTC ACTCGCCTGG CCGATGGCCG CGCCAACTGG GTCTTCGACT TCGGCCCCAA GGATGAAAAC GCTGAACCTT CTAAATGGCA GCTGGACATC GGCGCCATCG GCTTTGACCA AGGCAACGTC AGCTTCGACG ACCAGACCCT CAAAACCAGC ATGAAGGTGC AGATCGACCC GCTTGGCAAG CCAATCCCGT TCAGTGAGAT TGTCGGCAAG GCCAGCGCCG AGAAGGCCGG CGGTGCGCAG GACTATGCCT TCGCGCTCAA GGCTCAGGGC CGCTACAAAG GCCAGCCAGT GTCCGGCACC GGCAAGATCG GCGGCCTGCT GGCCCTGCAG GACGCCAGCC AGCCGTTCCC GCTGCAGGCC GACGTGCGCA TCGCCGACAC CCATGTGGTG CTCGCCGGCA CCCTCACCGA CCCGCGCAAC CTTGGTGCCC TCGACCTGCG CCTGCGTTTG TCGGGTGCCA GCCTGGGCAA CCTCTACCCA TTGACCGGCG TCACCTTGCC TGACACCCCG GCCTATTCCA CCGACGGCCG CCTAAGCGCC AACCTGCAGG CGGCGCAAGG GGCGTCGTTC AATTACCAGG GCTTCAACGG CAAGATCGGC GACAGCGATA TCCATGGGGA CCTGGCCTTC GTTGCCAGCC AGCCACGGCC CAGACTGTCC GGCAACCTGG TATCGAACCA GTTGCTGTTC AAGGACCTGG CGCCGCTGAT CGGTGCCGAC TCCAATGCCG AACAGAAGGC CCGCGGCGGT GCCAGCAAGC AGCCTGCAGG CAAGGTGCTG CCAGTGGAGG CGTTTCGCAC CGAGCGTTGG CGGGCAATGG ACGCTGATGT CACCTTTGCT GGCAAGCGCA TCGTGCACAG CGCGCAACTG CCGTTCACTG ACCTGTCGGC CCATGTGGTG CTCGAAGACG GCCTGTTACG CCTGGAGCCC CTGCGCTTTG GCGTGGCCGG CGGCAGCCTG GCCTCCAACA TCCGCCTGGA CGGGCGCAGC GTGCCCTTGC AGGGGCGCGC GAAGTTGACT GCGCGTGGCT TCAAGCTCAA GCAACTGTTC CCTACCTTCG CGCCAATGCA GACCAGCTTT GGTGAGCTCA ATGGCGACGC CGACATCAGC GGCCGTGGCA ACTCGGTAGC CGCCTTGCTG GGTACAGCCA ATGGCGACTT GCGCATGCTG ATCAACGATG GCGCCATCAG CCGCAGCCTG ATGGAAATTG CCGGCTTGAA CGTGGGCAAC TATGTGGTCG GCAAGCTGTT TGGTGATGAG GACGTGAAGA TCAACTGTGC GGCGGCCGAT GTGGGCATCA AGGATGGCCT GGCGACTACG CGGCTGTTCA TCTTCGATAC CGAGAACGCG ATCATCTACA TCGACGGCAC GGCGAATTTC GCTTCCGAGC AACTGGATTT GAACATCACC CCGGAATCGA AAGGGCTGCG GTTGTTCTCG TTGCGTTCAC CCCTGTATGT GCGCGGACCG TTTGCCAAAC CGAACGCCGG TGTGCAGGCA TTGCCGCTGG CGTTGCGTGG CGCAGGCATG GTTGCGCTGG GTGTGGTGGC TGGGCCGGCG GCGGGGTTGC TGGCGCTGAT TGCGCCCAGC AGCGGGGATG ACCCGAACCA GTGCACACCG TTGTTGCAGC AGATGAAGGC AGGCAAGGCG CCGGCAGCGG TGAAAGCGCG GAAATAG
|
Protein sequence | MTRPARILVW TLASLLTVLA ILVVVIATFD WNRVKPLLNE KVSEALHRPF AINGNLAVHW RTEPEEGGWR AWVPWPHFIA EDLTLGNPEW LKEPKMVGLE RVEFRLAPLP LVFQQISIPR INLTKPTASL TRLADGRANW VFDFGPKDEN AEPSKWQLDI GAIGFDQGNV SFDDQTLKTS MKVQIDPLGK PIPFSEIVGK ASAEKAGGAQ DYAFALKAQG RYKGQPVSGT GKIGGLLALQ DASQPFPLQA DVRIADTHVV LAGTLTDPRN LGALDLRLRL SGASLGNLYP LTGVTLPDTP AYSTDGRLSA NLQAAQGASF NYQGFNGKIG DSDIHGDLAF VASQPRPRLS GNLVSNQLLF KDLAPLIGAD SNAEQKARGG ASKQPAGKVL PVEAFRTERW RAMDADVTFA GKRIVHSAQL PFTDLSAHVV LEDGLLRLEP LRFGVAGGSL ASNIRLDGRS VPLQGRAKLT ARGFKLKQLF PTFAPMQTSF GELNGDADIS GRGNSVAALL GTANGDLRML INDGAISRSL MEIAGLNVGN YVVGKLFGDE DVKINCAAAD VGIKDGLATT RLFIFDTENA IIYIDGTANF ASEQLDLNIT PESKGLRLFS LRSPLYVRGP FAKPNAGVQA LPLALRGAGM VALGVVAGPA AGLLALIAPS SGDDPNQCTP LLQQMKAGKA PAAVKARK
|
| |