Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4718 |
Symbol | |
ID | 5195575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5285338 |
End bp | 5286744 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640589201 |
Product | D-alanine/D-serine/glycine permease |
Protein accession | YP_001270022 |
Protein GI | 148549920 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0967735 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0466612 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCAAA CCTCACCCAT AGCGACAGAT GAACCGCACC TGCAACGCAA CCTGACCAAC CGCCACATCC AGCTGATCGC CATCGGCGGC GCGATCGGTA CCGGTCTGTT CATGGGCTCA GGCAAGACCA TCAGCCTGGC CGGGCCATCG ATCATCTTCG TCTACATGAT TATCGGCTTC ATGCTGTTCT TCGTCATGCG CGCCATGGGC GAACTGCTGC TGTCGAACCT GAACTACAAA TCGTTCATCG ACTTTTCCGC CGACCTGCTC GGCCCCTGGG CCGGCTACTT TACTGGCTGG ACCTACTGGT TCTGCTGGGT GGTCACCGGC ATTGCCGACG TGGTCGCCAT CGCCGCCTAC ACGCAGTTCT GGTTCCCTGA CTTGCCGCAG TGGATACCGG CGCTGACCTG CGTAGGGCTG CTGCTGTCGC TGAACCTGGT CACCGTAAAA ATGTTCGGCG AAATGGAGTT CTGGTTCGCC CTGGTCAAGA TCGTTGCCAT CCTCGGTCTG GTCGCGACCG GCCTGTACAT GGTCATCACC GGCTTCACCT CGCCCAGCGG GCGCACCGCC CAGCTGGCCA ACCTGTGGAA TGACGGCGGC ATGTTCCCCC ATGGCCTGAT GGGCTTCTTC GCCGGTTTCC AGATCGCCGT GTTCGCCTTC GTCGGCATCG AGCTGGTGGG TACCACCGCC GCCGAAGCGA AGAACCCGGA ACGCACCCTG CCGCGGGCGA TCAATTCGAT CCCGATCCGC ATCATCGTGT TCTATGTGCT GGCGCTGATC GCGATCATGG CCGTGACCCC GTGGCGCGAC GTGGTGCCAG GCAAGAGCCC ATTCGTTGAG TTGTTCGTGC TGGCAGGCCT GCCGGCGGCA GCGAGCATCA TCAACTTCGT GGTGCTGACC TCGGCGGCCT CCTCGGCCAA CAGCGGCGTA TTCTCCACCA GCCGCATGCT CTACGGCCTG TCGCAGGAAG GTGACGCGCC CAAGGCCTTT GAAAAACTGT CGAGCCGTTC GGTGCCGGCC AACGGCCTGT ACTTCTCGTG CACCTGCCTG TTGCTCGGTG CGGTGCTGAT CTACCTGGTG CCGAACGTGG TCGAGGCATT CACCCTGGTC ACCACCGTGT CGGCGGTACT GTTCATGTTC GTGTGGACGC TGATTCTGCT GTCATACCTG AAGTACCGCA AAGACCGCGC GGCGCTGCAC CAGGCATCGA ACTACAAGAT GCCGGGCGGG CGCTTCATGT GCTACGTGTG CCTGTCGTTC TTCGCTTTCA TCCTGGTGTT GCTGAGCCTG GAAGCGGATA CCCGTTCAGC GCTGGTGGTG ACGCCGATCT GGTTTGTGGT GCTGGCGGTG ACCTACCAGC TCGTACGCAG CAGGCGCCAT CCCCGCACGG CCGTGCGTAA CGGCTGA
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Protein sequence | MTQTSPIATD EPHLQRNLTN RHIQLIAIGG AIGTGLFMGS GKTISLAGPS IIFVYMIIGF MLFFVMRAMG ELLLSNLNYK SFIDFSADLL GPWAGYFTGW TYWFCWVVTG IADVVAIAAY TQFWFPDLPQ WIPALTCVGL LLSLNLVTVK MFGEMEFWFA LVKIVAILGL VATGLYMVIT GFTSPSGRTA QLANLWNDGG MFPHGLMGFF AGFQIAVFAF VGIELVGTTA AEAKNPERTL PRAINSIPIR IIVFYVLALI AIMAVTPWRD VVPGKSPFVE LFVLAGLPAA ASIINFVVLT SAASSANSGV FSTSRMLYGL SQEGDAPKAF EKLSSRSVPA NGLYFSCTCL LLGAVLIYLV PNVVEAFTLV TTVSAVLFMF VWTLILLSYL KYRKDRAALH QASNYKMPGG RFMCYVCLSF FAFILVLLSL EADTRSALVV TPIWFVVLAV TYQLVRSRRH PRTAVRNG
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