| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4627 |
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| Symbol | |
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| ID | 5195083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5190284 |
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| End bp | 5191675 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640589110 |
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| Product | amino acid permease-associated region |
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| Protein accession | YP_001269931 |
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| Protein GI | 148549829 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000229605 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACACCG TGGGATCTGA TGGCAACCTT GCACAAGGTT TCAAGCCACG TCACGTAACG
ATGCTGTCCA TCGCCGGCAT CATCGGCGCC GGACTTTTCG TCGGCTCTGG CCATGCCATC
GCGGCAGCCG GGCCAGCAAC CATAATTTCC TATTTCGTGG CCGGGACCTT GGTGGTACTG
GTCATGCGCA TGCTCGGCGA AATGGCCGTG GCGCACCCCG ACACCGGATC GTTTTCCACC
TATGCCGACC AGGCCATTGG CCGCTGGGCC GGCTATACCA TCGGCTGGTT GTACTGGTGG
TTCTGGGTAC TGGTGATTCC TATCGAAGCA TTGGCCGCCG GGCATGTGCT GAACGCCTGG
TTCCCGCAGG TGGACAGCTG GATCTTCGCC CTGGCTTCGG TGTTGCTGCT GGCCGGTACC
AACCTGTTCA GCGTGGCCAA GTACGGCGAG TTCGAGTTCT GGTTTGCCAT CCTCAAGGTC
ACCGCCATCC TGGGCTTCAT CGGCCTGGGC TTCGCCGCGC TGATGGGCTG GCTGCCCAAC
CGCGAGGTCA GTGGGCTGAG CGGGCTGATG GCCGAGTACG GCGGCTTTGC GCCGAAGGGC
TGGTCGGCGG TGGTCGGCGC GTTCATCACT GTGATGTTCA GCTTCATCGG CACCGAGGCA
GTGACCATTG CCGCGTCCGA GTCCAGCGAC CCGTCGCGCA ACATCGCCAA GGCCACCCGC
TCGGTGATCT GGCGTATCAG CACCTTCTAC ATCCTGTCGA TCTTCGTGAT CATTTCGGTG
GTGCCGTGGA ACGACCCGCA GCTGGCGGTG GTGGGTTCGT ACCAGCGTGC GCTGGAAATC
ATGAACATCC CCAACGCCGC GTTCATGGTC GACCTGGTGG TGCTGGTAGC CGTTACCAGC
TGCATGAACT CGTCCATCTA CATCGCTTCG CGGATGATGT TTTCGCTGGC CAAGCGCGGT
GACGCCCCGG CCTTCCTCAA CAAGACCTCC AAGGTCGGTG TACCGCGTGC TGCAGTGTTC
GGCAGCACCC TGATCGGTGC GGCCATCGCA GTCCTCAACT ACTTCGCGCC GAAGGGCGTG
TTCGAGTTCC TGCTGGCCAG CTCCGGCGCC ATCGCCCTGT TGGTGTACAT GGTTATCGCC
ATCTCGCAGC TGCGCATGCG CCGCCGTCTG GAGCGCGAGA ACACCGAACT GAAGTTCCGC
ATGTGGCTGT TCCCATACCT GACCTGGGCG GTGATCATTT TCATTGCCGG GGCGCTGGCG
GTGATGATGT ACACGCCTGA GCATCGGGCG GAAGTGAGCT CGACATTGGG CCTGGCGATC
GTGATTTCCT TCCTGGGGAT CGTGACGTCG AGGGGCCATG CGCAACCGGT GGCAGCGCGA
TCGATGGGGT GA
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| Protein sequence | MNTVGSDGNL AQGFKPRHVT MLSIAGIIGA GLFVGSGHAI AAAGPATIIS YFVAGTLVVL
VMRMLGEMAV AHPDTGSFST YADQAIGRWA GYTIGWLYWW FWVLVIPIEA LAAGHVLNAW
FPQVDSWIFA LASVLLLAGT NLFSVAKYGE FEFWFAILKV TAILGFIGLG FAALMGWLPN
REVSGLSGLM AEYGGFAPKG WSAVVGAFIT VMFSFIGTEA VTIAASESSD PSRNIAKATR
SVIWRISTFY ILSIFVIISV VPWNDPQLAV VGSYQRALEI MNIPNAAFMV DLVVLVAVTS
CMNSSIYIAS RMMFSLAKRG DAPAFLNKTS KVGVPRAAVF GSTLIGAAIA VLNYFAPKGV
FEFLLASSGA IALLVYMVIA ISQLRMRRRL ERENTELKFR MWLFPYLTWA VIIFIAGALA
VMMYTPEHRA EVSSTLGLAI VISFLGIVTS RGHAQPVAAR SMG
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