| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4564 |
|---|
| Symbol | panB |
|---|
| ID | 5192192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5104845 |
|---|
| End bp | 5105645 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640589044 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_001269868 |
|---|
| Protein GI | 148549766 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0201384 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAG TAACCCTTAC CACCCTTAAC GGCCTCAAGG CCAAGGGTGA AAAAATCACC
ATGCTGACCT GCTACGACGC GACCTTCGCC AAGGCCGCCA GCCAGGCCGG CGTTGAAGTG
TTGCTGGTGG GCGACTCGCT GGGGATGGTC CTGCAGGGCC ACGACAGCAC CTTGCCGGTC
ACCACGGCGG AGATGGCCTA CCACACCGCC AGCGTCAAAC GCGGCAATGA CGGCGCGCTG
ATCCTCACCG ACCTGCCGTT CATGGCCCAC GCCACGCCGG AGCAGGCCTT TGCCAACAGC
GCCACGCTGA TGCAGGCCGG CGCCCACATG GTCAAGATCG AAGGCGCAGC CTGGCTGGCC
GAAACCATCC GCTTGCTGGC CGAACGTGGT GTACCGGTGT GCGCACACAT GGGCCTGACC
CCGCAAACCG TCAACGTGCT GGGCGGCTAC AAAGTGCAGG GCCGCCAGGA GGCCCAGGCC
CGGCAGATGC GCGCCGACGC CATTGCCCTG GAACAGGCCG GTGCGGCCAT GCTGCTGCTC
GAGTGCGTAC CCAGCGAGCT GGCAGCGGAA ATCACCAATG CCGTTGGCAT CCCGGTAATC
GGCATTGGCG CCGGCAGCGC CACCGATGGC CAGGTACTGG TACTGCACGA TATGCTCGGC
CTGTCGCTGA GCGGCCGGGT ACCGAAGTTC GTGAAGAACT TCATGCAGGG CCAACCGGAT
ATCCATAGCG CCCTCGTCGC TTACGTTGAG GCGGTCAAGC AAGTCAGTTT CCCAGGCAGC
GAACACGGGT TCAGTGCATG A
|
|---|
| Protein sequence | MPEVTLTTLN GLKAKGEKIT MLTCYDATFA KAASQAGVEV LLVGDSLGMV LQGHDSTLPV
TTAEMAYHTA SVKRGNDGAL ILTDLPFMAH ATPEQAFANS ATLMQAGAHM VKIEGAAWLA
ETIRLLAERG VPVCAHMGLT PQTVNVLGGY KVQGRQEAQA RQMRADAIAL EQAGAAMLLL
ECVPSELAAE ITNAVGIPVI GIGAGSATDG QVLVLHDMLG LSLSGRVPKF VKNFMQGQPD
IHSALVAYVE AVKQVSFPGS EHGFSA
|
|---|
| |