| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4560 |
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| Symbol | |
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| ID | 5192066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5097333 |
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| End bp | 5100308 |
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| Gene Length | 2976 bp |
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| Protein Length | 991 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640589040 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_001269864 |
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| Protein GI | 148549762 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.310149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000734254 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGATGA GCTTTAGCCT GACCCAGATG ATCCTGATCA GCGCCGGGTA CCTCATGGTG
CTGTTCGGCG TGGCCTGGAT CAGCGAGCGC GGGCTGATCC CGCGTTCGAT CATTCGCCAC
CCACTCACCT ACACCCTGTC GCTGGGCGTC TACGCCAGTG CCTGGGCCTT CTATGGCTCG
GTTGGCCTGG CCTACCAGTA CGGCTACGGC TTCCTTGCCT GTTACCTGGG GGTGTCTGGC
GCATTCCTGC TGGCGCCGGT GCTGCTCTAT CCGATCCTCA AGATCACCCG CACCTACCAG
CTGTCATCCC TGGCCGACCT GCTGGCCTTC CGCTTCCGCA GTACCTGGGC CGGGGCCTTG
ACCACCATCA TCATGCTGAT TGGCGTGCTC CCGTTGCTGG CCCTGCAGAT CCAGGCGGTG
GCTGACTCGA TCAGCATCCT TACCGGTGAA CCGGTCAAGG CCCGGGTGGC CTTTGCCTTT
TGCACGCTGA TCATTCTGTT CACCATCTTC TTCGGCTCGC GGCACATCGC CACGCGCGAA
AAGCATGAGG GGTTGGTTTT CGCCATCGCC TTCGAGTCGG TGATCAAGCT GCTGGCCTTG
GGCGGTATCG GCCTGTATGC CTTGTATGGC GTATTCGGCG GCCCGCACGA GCTGGAAGTC
TGGCTGTTGC AGAACCAGAC CGCCCTTGCC GCCCTGCACA CCCCCCTGCA GGAAGGCCCA
TGGCGCACCC TGCTGCTGGT GTTCTTCGCC TCGGCCATCG TCATGCCGCA TATGTACCAC
ATGGCCTTTA CCGAAAACCT CAACCCGCGC TCGCTGGTCA GCGCCAGCTG GGGCCTGCCG
CTGTTCCTGC TGCTGATGAG TCTTGCCGTG CCGCTGGTGC TGTGGGCCGG CCTGCGCCTG
GGCGCCAGCA CCAACCCCGA GTACTTCACC CTGGGCCTGG GCATCGCCGC CAACAACCAG
GCATTGGCAC TGCTGGCCTA CATTGGCGGC CTGTCGGCAG CCAGCGGCCT GATCATCGTC
ACCACCCTGG CGCTGTCGGG CATGGCCCTG AACCACTTGG TGCTGCCGCT TTACCAGCCC
CCGGCCGAAG GCAACATCTA CCGTTGGCTG AAGTGGACCC GCCGTGCATT GATCGTCGCC
ATCATCACTG CCGGCTTCAT GTTCTACCTG AGCCAGAACT ACCACCAGAG CCTGGCCAAC
CTGGGCATCG TCGCCTTCGT CGCCACCTTG CAGTTCCTGC CTGGGGTGCT GTCGGTACTC
TACTGGCCAA CCGCCAACCG CCGCGGTTTC ATCGCCGGGC TGCTGGCCGG CACTCTGGTG
TGGATGGTGA CCATGCTGCT GCCGCTTCTC GGCAACTTGC AGGGTTTCTA CATCCCGCTG
CTGGACATGA TCTATGTGCT GGACGACACC AGCTGGCACA TGGCAGCCAT CGCCTCGTTG
GCGGCCAACG TGCTGCTGTT CACCCTGATC TCACTGTTCA CCAACGCCAG CACCGAAGAG
GTCAGCGCGG CCGAAGCCTG TGCCGTGGAT AACGTGCGCC GTCCGCAGCG CCGCGAGCTG
CACGCCGCCT CGCCGCAGGA ATTCGCCACC CAGCTGGCCA AGCCGCTGGG CGCCAAGGCC
GCGCAAAAGG AAGTCGAGCA AGCACTGCGC GACCTCTACC TGCCGTTCGA CGAACGCCGC
CCCTATGCCC TGCGCCGCCT GCGCGACCGC ATCGAAGCCA ACTTGTCCGG CCTGATGGGG
CCGAGCGTGG CCCAGGACAT GGTCGAGACT TTCCTGCCGT ACAAGTCCGG CAACGAAAAC
TACGTGACCG AAGACATCCA CTTCATCGAA AGCCGCCTGG AAGACTACCA CTCGCGCCTG
ACCGGGCTGG CCGCCGAACT CGATGCCTTG CGCCGCTACC ATCGCCAGAC CCTGCAGGAA
TTGCCCATGG GCGTCTGCTC ACTGGCCAAG GACCAGGAAA TCCTGATGTG GAACAAGGCC
ATGGAAGAGC TCACCGGCAT CGCCGCCAAG CATGTGGTCG GCTCGCGCCT GGTCACCATC
GACGAGCCTT GGCGCGGCCT GCTGCAAGGC TTCATCAACG TGCCCGACGA GCACCTGCAC
AAACAGCGCC TGGCGCTGGA CGGCCAGCCA CGCTGGCTGA ACCTGCACAA GGCAGCCATC
GACGAGCCAC TGGCACCCGG TAACAGCGGG CTGGTATTGC TGGTGGAGGA CCTTACCGAA
ACCCAGGCAC TGGAAGACAA GCTGGTGCAC TCCGAGCGCC TGGCCAGCAT CGGCCGACTG
GCCGCCGGCG TGGCCCACGA GATCGGCAAC CCGATCACCG GCATCGCCTG CCTGGCGCAA
AACCTGCGCG AGGAACGCGA AGGCGATGGT GAAATCATCG AGTTGTCCAG CCAGATCCTT
GACCAGACCA AGCGCGTATC GCGCATCGTC CAGTCGCTGA TGAGCTTCGC CCATGCTGGC
GGCAGCCACC AGAACAGCGA GGAACCGGTG TGCCTGGCCG AAGTGGCACA AGATGCCATC
GGTCTGCTGG CGTTGAACCG GCGCAATTTC GAAGTACAGT TCTTCAACCT TTGCGACCCG
GACCATTGGG CCGAAGGTGA CCCGCAGCGC CTGGCCCAGG TGCTGATCAA CCTGCTCTCC
AACGCCCGCG ATGCCTCGCC GCCCGGTAGC GCCGTGCGCG TGCGCAGCGA GGTTAACGAG
CACACCGTCG ACCTGATCGT CGAAGACGAA GGCAGCGGGA TTCCGAAGAA CATCATGGAC
CGCCTGTTCG AACCCTTCTT CACCACCAAG GACCCGGGCG AAGGAACCGG ACTGGGGCTC
GCTCTGGTCT ATTCCATCGT GGAAGAGCAT TATGGGCAAA TCACCATCGA CAGCCCGGCC
GATATCGAAC GGCAACGTGG CACCCGGATC CGCGTGACCC TGCCCCGGCA TGTCGTAGCG
ACGTCCCCTG AAATTCGAGA CCGTCGAGAG AATTGA
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| Protein sequence | MPMSFSLTQM ILISAGYLMV LFGVAWISER GLIPRSIIRH PLTYTLSLGV YASAWAFYGS
VGLAYQYGYG FLACYLGVSG AFLLAPVLLY PILKITRTYQ LSSLADLLAF RFRSTWAGAL
TTIIMLIGVL PLLALQIQAV ADSISILTGE PVKARVAFAF CTLIILFTIF FGSRHIATRE
KHEGLVFAIA FESVIKLLAL GGIGLYALYG VFGGPHELEV WLLQNQTALA ALHTPLQEGP
WRTLLLVFFA SAIVMPHMYH MAFTENLNPR SLVSASWGLP LFLLLMSLAV PLVLWAGLRL
GASTNPEYFT LGLGIAANNQ ALALLAYIGG LSAASGLIIV TTLALSGMAL NHLVLPLYQP
PAEGNIYRWL KWTRRALIVA IITAGFMFYL SQNYHQSLAN LGIVAFVATL QFLPGVLSVL
YWPTANRRGF IAGLLAGTLV WMVTMLLPLL GNLQGFYIPL LDMIYVLDDT SWHMAAIASL
AANVLLFTLI SLFTNASTEE VSAAEACAVD NVRRPQRREL HAASPQEFAT QLAKPLGAKA
AQKEVEQALR DLYLPFDERR PYALRRLRDR IEANLSGLMG PSVAQDMVET FLPYKSGNEN
YVTEDIHFIE SRLEDYHSRL TGLAAELDAL RRYHRQTLQE LPMGVCSLAK DQEILMWNKA
MEELTGIAAK HVVGSRLVTI DEPWRGLLQG FINVPDEHLH KQRLALDGQP RWLNLHKAAI
DEPLAPGNSG LVLLVEDLTE TQALEDKLVH SERLASIGRL AAGVAHEIGN PITGIACLAQ
NLREEREGDG EIIELSSQIL DQTKRVSRIV QSLMSFAHAG GSHQNSEEPV CLAEVAQDAI
GLLALNRRNF EVQFFNLCDP DHWAEGDPQR LAQVLINLLS NARDASPPGS AVRVRSEVNE
HTVDLIVEDE GSGIPKNIMD RLFEPFFTTK DPGEGTGLGL ALVYSIVEEH YGQITIDSPA
DIERQRGTRI RVTLPRHVVA TSPEIRDRRE N
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