Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4553 |
Symbol | |
ID | 5193250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5092095 |
End bp | 5092979 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640589033 |
Product | periplasmic binding protein |
Protein accession | YP_001269857 |
Protein GI | 148549755 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4558] ABC-type hemin transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.697431 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000000125812 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGCGCC GTCCAGCTGC TTTTCTTGCT CTGTGTGCAA GCCTTGTGCT CTCTACCCAA GCCTTGGCAG CCGAGCTGCC GCAACGCTGG GTCAGCGCGG GTGGCGCCTT GAGCGAGTGG ATAACCGCAT TGGGAGGTGA AGCGCGCCTG GTCGGTGTGG ACACTACCAG TCAGCACCCG GCCTCGTTGA AAGCCTTGCC CAGTGTGGGT TATCAGCGGC AACTGTCGGC CGAAGGCATC CTCAGCCTGC GCCCGGATGT GCTGGTGGGC ACCGAGGAAA TGGGGCCGCC ACCGGTACTG GCGCAAATCC GCAAGGCCGG TGTGCGGGTC GAGTTGTTCT CCAGCAAGGC CGAGCTGCCG GCTGTAGATG AAAACCTCAG GCACCTGGGG CAGTTGCTCG GTGCAGAGCA GCAAGCGTCC GCGCTTGCTG CGGACTACCG CCAGCGGCTC GATGCGTTGC AGGCCAACGT CAAGCTGGCC CAGGCCGGGC AGCAGGCTCC CGGGGTGTTG CTGCTGGTCG GCCATGCCGG GGCCAAGCCG CTGATCGCCG GGCAAGGCAC TGCCGGTGAC TGGCTGCTGA GCCAGGCGGG TGGGCGTAAC CTGGCCGCGC ACCCAGGCTA CAAGAACTTC TCCAACGAAG CCTTGGCGGC GCTTGACCCG GATGTGATCG TGTTTTCCGA CCGGGCGCTG GCCGATGAAC AGGCCTTGCA GGCGCTGTTG AAAGAAAACC CCGCGCTGGC TGCCTCGCGG GCCGTGCGTG AGAAACGCCT GGTCTCACTG GACCCGACGC TGCTGGTCGG CGGGCTCGGG CCTCGGCTAC CGGCGACCTT GCAGTCGCTG GCAGCCACCT TCTACCCGGC TGCTCAGGCC AGCTTCGCAC AATGA
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Protein sequence | MMRRPAAFLA LCASLVLSTQ ALAAELPQRW VSAGGALSEW ITALGGEARL VGVDTTSQHP ASLKALPSVG YQRQLSAEGI LSLRPDVLVG TEEMGPPPVL AQIRKAGVRV ELFSSKAELP AVDENLRHLG QLLGAEQQAS ALAADYRQRL DALQANVKLA QAGQQAPGVL LLVGHAGAKP LIAGQGTAGD WLLSQAGGRN LAAHPGYKNF SNEALAALDP DVIVFSDRAL ADEQALQALL KENPALAASR AVREKRLVSL DPTLLVGGLG PRLPATLQSL AATFYPAAQA SFAQ
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