Gene Pput_4538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4538 
Symbol 
ID5193760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5067408 
End bp5070890 
Gene Length3483 bp 
Protein Length1160 aa 
Translation table11 
GC content64% 
IMG OID640589013 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_001269842 
Protein GI148549740 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.483988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0568406 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCACA CCGCCCATCT CCACCCAGGC TTCATGATCG TCCACGGCAA CCGCCTCGAC 
GACCTGCGTA GCCTGGTAGT GAGCTGGATG CGTCGCTACC CGCTGGCGCC TCTGGAAAAC
GAAATTGCCC TGGTGCAAAG CAATGGCATC GCCCAATGGC TGAAGCTGGC CCTGGCTGAA
GATCCGCTGG AAGATGACCA AGGCGGCTGC GGCATCGCCG CTGCCATCGA TGTGCAACTG
CCCGGTAGCT TTATGTGGCA GCTCTACCGC AGCGTGCTTG GCCGTAGCGA AATTCCCGAA
GTGTCTCTTC TCGACAAGGC ACCACTGACC TGGCGGCTGA TGCGTCTGTT GCCAGCGCTC
ATCGAGCGTC CGCATTTCGA GCCACTGCGG CGCTTCCTCA CCGACGACAG TGACTTGCGC
AAGCGCTACC AGCTAGCCGA GCGCCTGGCC GACCTGTTCG ACCAGTACCA GGTCTACCGT
GCCGATTGGC TCAAGGACTG GGCCAGTGGC GAGCACGTCA TCAACACGGC CCGCGGCGAG
CGCAAAGTAC TGCCGCCAGG CAACCGCTGG CAAGCCGAGT TGTGGCGAGC ATTACTGGAG
GATGTTGGCG AGCAAGGCAT GGCGCAGAGC CGCGCCGGAG TACACCAACG TTTCATCGAG
CGCATCAACA GCCTGGAGCA GGCGCCTGCA GGGCTGCCAC CGAGGGTGAT CGTGTTCGGT
ATCTCTTCGC TGCCGGCCCA GGCCCTGGAA GCGCTGGCAG GCCTGTCGCG TTTCAGTCAG
GTATTGCTGT GCGTACACAA CCCATGCCGC CACCACTGGG CCGATATCGT CGCCGACAAG
GACCTGTTGC GCCACCAGTA CAAACGCCAG CAACGCAAGC AAGGCATGCC CCTGCAATTG
GACGACCAGA CGCTGCACCA GCATGCCCAC CCATTGCTGG CAGCCTGGGG TAAACAAGGC
CGCGACTACA TCAACCTGCT CGACAGCTAT GATGACCCAG GCAGCTACCA GGGCGTGTTC
AGCGACGGCC GCATCGACCT GTTCAGCGAC GGTTCGCCCA CCACGCTGCT AAACGAACTG
CAGGACGACA TCCTGGAGTT GCGCCCGCTC GCCGAGAGCC GCGAACGGTG GCCGCCAGTC
GACACCACAA AAGACCGCTC GATCCGCTTC CATGTTGCGC ACAGCCCGCA ACGTGAAGTG
GAGATCCTCC ACGACCAGCT GTTGGCCCGC TTCAGCGCCG ACCCGACTTT GCGCCCGCGC
GACGTAATCG TCATGCTGCC GGACATCGAC ACTTACGCGC CGCATATCCG CGCCGTCTTC
GGCCAGTTGC AGCGCAACGA CCCGCGCTAC ATCCCGTTCA CCCTGACAGA CCAGGGCCAG
CGTGGTCGCG AGCCTTTGCT GATCGCGCTT GAGCACCTGC TCAAACTGCC TGACAGCCGC
TTCGCGGTCA GCGAAGTGCT CGACCTGCTG GACGTGCCGG CAGTCCGCGC CCGCTTCGGC
ATCCGCGAAA ACGATCTGCC CACGCTGCAC CGCTGGATCG AGGGCGCTGG CATCCGTTGG
GGCCTTGACG CCGCGCAGCG GGCGAGCCTG GGCTTGCCCG CCGGGCTCGA ACAGAACAGT
TGGCGTTTCG GCTTGCGCCG CATGCTGTTG GGTTATGCCG TGGGGGTGGG TGAGGCCTGT
GATGGTATTG AGCCCTACGA TGAAATCGGT GGCCTGGACG CGGCACTGAT CGGCCCGCTG
GTCGCGTTGC TGGATGCGCT CGAAGTCGCC TGCCAGGCCT TGTCCGAGCC TGCCACCGTC
AGCCAGTGGG GCGAGCGACT GCATGCCTTG CTGCACGTGT TCTTCCTCGC CGAGGACGAG
GGTGATGAGT TCCTGTTGAT GCAGTTGCAG GATTTGCGTG ATAGCTGGCT TGAGGTGTGC
GAGACCGTCG GCCTGCACGA CCCGCTACCG CTTACCGTGG TGCGTGAAGC CTGGTTGTCG
GGCCTTGATC AGGGCAAGCT GTCACAACGT TTCCTCGCCG GCTCGGTCAA CTTCTGCACA
CTCATGCCCA TGCGCGCGAT CCCGTTCAGG GTGGTCTGCC TGCTGGGCAT GAACGATGGC
GATTATCCGC GTGCGCAGCC ACCGCTGGAC TTCGACCTGA TGGCCAGCGA CTATCGCCCC
GGCGACCGCT CACGCCGCGA AGACGACCGT TACCTGTTGC TTGAAGCGCT ACTGTCCGCA
CGTGACCAAC TGTATGTCAG CTGGGTCGGG CGCAGTATTC GCGACAATAG CGAACGCCCG
GCCTCGGTGC TGATCGGCCA GTTGCGCGAT CACATCGCTG CGGGCTGGCA TTTGGCCGAC
GCGCAGCAGG GCCAGCCCGC GAAACCGGGC GAGCAACTGT TGCACGCACT GACCCAGGAG
CACCCGCTGC AGCCGTTCAG CCCTCGGTAC TTCCAGAAGG GCAGCCCATT GTTCAGCTAT
GCCCATGAAT GGCAGGTGCT GCACCAGCAA GGTGAGGCAG ACGAGCAGAG CGAGCCGGGC
CTGCCGCCTT ATCAGGACGC TGAAGCCCTG AGTTTGCACC AGCTGAATGA CTTCTTGCGC
CACCCGGTAC GGCACTTCTT CAGCCAGCGC TTGAAGGTGT ACTTTGAGGC GCTGGAAGCG
CCGACCCCGG ACGAGGAACC CTTCGTCCTC GATACCCTGC AACGCTACGG CGCCAGTGAA
AGCCTGCTTG GCGCCGCCTT GGCCGAACCG GACAACGCCG AACAGGCCTT GCGCGCCCAG
GCCCGACGCC TGCAGGCCTG CGGTTTGCTG CCGCTAGCAG GTTTCGGCGA ACTGCTGCAA
AACGAGTTGA TCGAACCGCT GCCGGACCTG CTGCAACGTC ACCAGCAATT GCTGCAACGC
TGGCCACAGC TGGTCGAGGG CGCTTTGCCG GTGCATTTCG AGCACGGTCA GCACCGTCTG
GAGGGCTGGC TGGGCCGGGT GTTCCAGGCG GAAGATCAGA GCCTTCTCAG CATCACCACA
GTACCCAACA CTATCAGTGC CGGGCGCAAC AACCTGAAGT GGCACCGCCT TATCGCGCCC
TGGGCTACGC ACCTGGCGGC CTGTGCAGCG GGCTACCCCT ATAACAGTGC ATTGGTAGCC
AGTGACCTGA CCCTGTTGCT TGCACCGCTG CCGCAAGCGC TGGCCGCGCA ACTGCTGGGC
GACCTACTGG TGGCCCGTCA GGCGGCAATG AATGCGCCGT TGCCAGTCGC GGCCAAGACC
GCGTTCGCCT GGTTGGCCCA GGACGATGCC GATAAAGCCA TGGCCGCAGC AGCTCGCGCC
TACGAAGGCG ACGAACGCAC CAGTTTTGGC GAACGGAGTG AAAGCATTGC CTTGGCCCGC
CAGTTCCGGG ACTTTGCAGC ACTCACTGCT GACGAAACGT TTGAAGGCTG GTGCGAAACC
TTGTATCGCC CGTTGTTCAC CGCCCCTTGG CAGACCTTGG GCAACCCGGA GAAAGGCGCA
TGA
 
Protein sequence
MPHTAHLHPG FMIVHGNRLD DLRSLVVSWM RRYPLAPLEN EIALVQSNGI AQWLKLALAE 
DPLEDDQGGC GIAAAIDVQL PGSFMWQLYR SVLGRSEIPE VSLLDKAPLT WRLMRLLPAL
IERPHFEPLR RFLTDDSDLR KRYQLAERLA DLFDQYQVYR ADWLKDWASG EHVINTARGE
RKVLPPGNRW QAELWRALLE DVGEQGMAQS RAGVHQRFIE RINSLEQAPA GLPPRVIVFG
ISSLPAQALE ALAGLSRFSQ VLLCVHNPCR HHWADIVADK DLLRHQYKRQ QRKQGMPLQL
DDQTLHQHAH PLLAAWGKQG RDYINLLDSY DDPGSYQGVF SDGRIDLFSD GSPTTLLNEL
QDDILELRPL AESRERWPPV DTTKDRSIRF HVAHSPQREV EILHDQLLAR FSADPTLRPR
DVIVMLPDID TYAPHIRAVF GQLQRNDPRY IPFTLTDQGQ RGREPLLIAL EHLLKLPDSR
FAVSEVLDLL DVPAVRARFG IRENDLPTLH RWIEGAGIRW GLDAAQRASL GLPAGLEQNS
WRFGLRRMLL GYAVGVGEAC DGIEPYDEIG GLDAALIGPL VALLDALEVA CQALSEPATV
SQWGERLHAL LHVFFLAEDE GDEFLLMQLQ DLRDSWLEVC ETVGLHDPLP LTVVREAWLS
GLDQGKLSQR FLAGSVNFCT LMPMRAIPFR VVCLLGMNDG DYPRAQPPLD FDLMASDYRP
GDRSRREDDR YLLLEALLSA RDQLYVSWVG RSIRDNSERP ASVLIGQLRD HIAAGWHLAD
AQQGQPAKPG EQLLHALTQE HPLQPFSPRY FQKGSPLFSY AHEWQVLHQQ GEADEQSEPG
LPPYQDAEAL SLHQLNDFLR HPVRHFFSQR LKVYFEALEA PTPDEEPFVL DTLQRYGASE
SLLGAALAEP DNAEQALRAQ ARRLQACGLL PLAGFGELLQ NELIEPLPDL LQRHQQLLQR
WPQLVEGALP VHFEHGQHRL EGWLGRVFQA EDQSLLSITT VPNTISAGRN NLKWHRLIAP
WATHLAACAA GYPYNSALVA SDLTLLLAPL PQALAAQLLG DLLVARQAAM NAPLPVAAKT
AFAWLAQDDA DKAMAAAARA YEGDERTSFG ERSESIALAR QFRDFAALTA DETFEGWCET
LYRPLFTAPW QTLGNPEKGA